| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,052,947 – 19,053,047 |
| Length | 100 |
| Max. P | 0.695328 |
| Location | 19,052,947 – 19,053,047 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.45 |
| Mean single sequence MFE | -29.35 |
| Consensus MFE | -17.65 |
| Energy contribution | -18.52 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.695328 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19052947 100 - 22224390 UACACUGCGAAAAGUAAGAGUGCAACAAGUCAAUAUUUGCGGUG------------------GCCAAUUGCGCAAAGCGCACCGG--GGCAAGAUACACAACUGCGAUUUCUAAGAUAUG ..(((((((((......((.(......).))....)))))))))------------------(((...(((((...)))))....--))).............................. ( -22.90) >DroSec_CAF1 4768 98 - 1 UACACUGCGAAAAGUAAGAGUGCAGCUAGUCAAUAUUUGCGGUG------------------UUCAAUUGCGCAAAGCGAACCGAGAGGCAAGGAAAACAGCUGCGAUUUCGCAUA---- .....(((((((........(((((((..((....(((((.(((------------------(......))))...)))))((....))....))....))))))).)))))))..---- ( -28.70) >DroSim_CAF1 6125 98 - 1 UACACUGCGAAAAGUAAGAGUGCAGCAAGUCAAUAUUUGCGGUG------------------GUCAAUUGCGCAAAGCGAACCGAGAGGCGAGGAAAACAGCUGCGAUUUCGCAGA---- ....((((((((.....((.(((.((((((....)))))).)))------------------.)).....((((..((...((....))...(.....).)))))).)))))))).---- ( -29.20) >DroEre_CAF1 5576 114 - 1 UACACUGCGAAAAGUAAGAGUGCAGCAAGUCAAUAUUUGCGCUGGGCACGGCCUAUUACCGUGUCAAUUAUGCAAAGCGAACCGA--AGCAAAGAAAACAGCUGCGAUUUCGCGGA---- ....((((((((........((((((.........((((((...(((((((.......))))))).....))))))((.......--.))..........)))))).)))))))).---- ( -36.60) >consensus UACACUGCGAAAAGUAAGAGUGCAGCAAGUCAAUAUUUGCGGUG__________________GUCAAUUGCGCAAAGCGAACCGA__GGCAAGGAAAACAGCUGCGAUUUCGCAGA____ ....((((((((........((((((.........((((((.............................))))))((..........))..........)))))).))))))))..... (-17.65 = -18.52 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:03 2006