| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,051,923 – 19,052,026 |
| Length | 103 |
| Max. P | 0.995537 |
| Location | 19,051,923 – 19,052,026 |
|---|---|
| Length | 103 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 67.16 |
| Mean single sequence MFE | -38.02 |
| Consensus MFE | -24.86 |
| Energy contribution | -28.30 |
| Covariance contribution | 3.44 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.65 |
| SVM decision value | 2.59 |
| SVM RNA-class probability | 0.995537 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19051923 103 + 22224390 AAAAUACCCGAGUUAUCUGGCGGUUCCGUGUCU---------UGGCGACUAUGC--------GAUGGAUGGUCGGGUGGCUCGGUCAGUGGUUUCAUCGGCUUCUGGUCAGUGGGUGGUG ....(((((((((((((((((.((.((((((..---------.(....)...))--------.)))))).))))))))))))(..(((.((((.....)))).)))..)...)))))... ( -41.40) >DroSim_CAF1 5162 86 + 1 AAAAUACCCGAGUUAUCUGGCUGUUCCGUGCCU---------CGGCGACU-------------------------GUGGCUCGGUCAGUGGUUUCUUCGGCUUCUGGUCAGUGGGUGGUG ....((((((((..(((..((((..(((.(((.---------(((...))-------------------------).))).))).)))))))..))).(((.....)))...)))))... ( -28.60) >DroEre_CAF1 4360 82 + 1 AAAAUAGCCGAGUUAUCUGGUGGUUCCGUGUCU---------UGGCGACUGGGAGA------GCUGGAUCGCCGGGUGGCUCGGAC-----------------------AGUGGGUGGUG ......((((((((((((((((((((.((.(((---------..(...)..)))..------)).))))))))))))))))))).)-----------------------........... ( -37.10) >DroYak_CAF1 4929 120 + 1 AAAAUACCCGAGUUAUCUGGUGGUUCCGUGUCUCUGGCGACUUGGCGACUUGGUGACUGGACGGUGGAUCGCCGUGUGGCUCGGUCAGUGGUUGGUUCGACUCUUGGUCAGUGGGUGGUG ....((((((((((((.(((((((((((((((...(....)..)))..((.(....).))))))..)))))))).)))))))(..(((.(((((...))))).)))..)...)))))... ( -45.00) >consensus AAAAUACCCGAGUUAUCUGGCGGUUCCGUGUCU_________UGGCGACU_GG_________G_UGGAUCGCCGGGUGGCUCGGUCAGUGGUUUCUUCGGCUUCUGGUCAGUGGGUGGUG ....((((((((((((((((((((((..((((...........))))..................)))))))))))))))))(..(((.((((.....)))).)))..)...)))))... (-24.86 = -28.30 + 3.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:59 2006