Locus 7635

Sequence ID X_DroMel_CAF1
Location 19,047,708 – 19,047,809
Length 101
Max. P 0.786011
window12533

overview

Window 3

Location 19,047,708 – 19,047,809
Length 101
Sequences 4
Columns 101
Reading direction forward
Mean pairwise identity 82.18
Mean single sequence MFE -34.76
Consensus MFE -25.70
Energy contribution -25.82
Covariance contribution 0.12
Combinations/Pair 1.08
Mean z-score -1.80
Structure conservation index 0.74
SVM decision value 0.57
SVM RNA-class probability 0.786011
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19047708 101 + 22224390
ACCAGGAGAGCUCUUCCGCUCCCGAAGAGACCACUUCCGCUCCCGAAGAGACCACUUCCGCUCCCGAAGAGACCACUUCCGCUCCCGAGGAGAGCUCUUCC
....((((((((((((((.....((((......)))).((....((((......)))).......((((......)))).))...)).)))))))))))). ( -29.60)
>DroSec_CAF1 477 80 + 1
ACCAGGAGAGCUCUUCCGCUCCCGAGGAGACCACUUCCGUUCCCGAAGAGACCACAUCC---------------------GCUCCCGAGGAGAGCUCUUCC
....((((((((((((((((((...))))....((((.......))))...........---------------------.....)).)))))))))))). ( -26.60)
>DroSim_CAF1 851 101 + 1
ACCAGGAGAGCUCUUCCGCUCCCGAGGAGACCACUGCCGCUCCCGAAGAGACCACAUCCGCUCCCGAGGAGAGCUCUUCCGCUCCCGAGGAGAGCUCUUCC
....((((((((((((((.(((((.((((..........(((.....)))..........)))))).)))((((......)))).)).)))))))))))). ( -40.25)
>DroYak_CAF1 408 101 + 1
ACCAGGAGAGCUCUGCCGCUCCCGAGGAGACCACUUCCGCUCCCGAGGAGAGCUCUGCCGCUCCCGAGGAGAGCUCUGCCGCUCCCGAGGCCAGCUCUUCU
...(((((((((..(((.....((.((((..........)))))).((((((((((.((........)))))))))).))........))).))))))))) ( -42.60)
>consensus
ACCAGGAGAGCUCUUCCGCUCCCGAGGAGACCACUUCCGCUCCCGAAGAGACCACAUCCGCUCCCGAGGAGAGCUCUUCCGCUCCCGAGGAGAGCUCUUCC
....(((((((((.(((.....((.((((..........))))))..(((..........(((.....)))..........)))....)))))))))))). (-25.70 = -25.82 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:56 2006