| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,044,202 – 19,044,315 |
| Length | 113 |
| Max. P | 0.937763 |
| Location | 19,044,202 – 19,044,315 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 76.76 |
| Mean single sequence MFE | -35.98 |
| Consensus MFE | -27.88 |
| Energy contribution | -27.72 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.77 |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.937763 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19044202 113 - 22224390 -CGACAAAUUUAACAC-AACAUUCUAUCGCCUUGUCCAAGGUAUCGGCUCCAGCUUGUACCUGUGGAAGACGCACGUCAUUCUGGAGGCAGUGCGUCCGCGGGAGGACAAGUACG -...............-.............(((((((.((((((.(((....))).))))))(((((...((((((((........))).))))))))))....))))))).... ( -38.10) >DroGri_CAF1 6016 89 - 1 -----------------------GUGUGU---CGUUUAAGGUAUUGGCUCCAGCCUGUAUCUGUGGAAGACGCACGUCAUACUGGAGGCAGUGCGUCCGCGCGAGGACAAGUAUG -----------------------((((((---(.((((((((((.(((....))).)))))).)))).)))))))..(((((((((.((...)).))).(....)....)))))) ( -34.20) >DroSec_CAF1 1372 114 - 1 -CGCAAAAUUAAACACUUACAUUCUAUCCCCUCGUCCAAGGUAUCGGUUCCAGCUUGUACCUGUGGAAGACGCACGUCAUCCUGGAGGCAGUGCGUCCGCGGGAGGACAAGUACG -.............((((...((((...(((.((((((((((((.(((....))).)))))).)))).((((((((((........))).))))))))).))))))).))))... ( -35.90) >DroEre_CAF1 5121 110 - 1 ACCACAGA---AACAC-UACAUUCUAUC-CCUUACCCAAGGUAUCGGCUCCAGCUUGUACCUGUGGAAAACGCACGUCAUCCUGGAGGCAGUGCGUCCGCGGGAGGACAAGUACG .((..(((---(....-....)))).((-((.......((((((.(((....))).))))))(((((...((((((((........))).))))))))))))))))......... ( -36.20) >DroYak_CAF1 1432 112 - 1 -CUUCAUAUUUAACAC-UACUUUCAAUC-CCUUGCCCAAGGUAUCGGCUCCAGCUUGUACCUGUGGAAGACGCACGUCAUCCUGGAGGCAGUGCGUCCGCGGGAGGACAAGUACG -...............-(((((....((-(((((((((((((((.(((....))).)))))).)))..((((((((((........))).))))))).))))).))).))))).. ( -39.30) >DroMoj_CAF1 5043 89 - 1 -----------------------CUAUGG---CCUUUUAGGUAUCGGCGCCAGUCUCUAUCAGUGGAAGACGCACGUCAUACUGGAGGCAGUGCGUCCGCGCGAGGACAAGUACG -----------------------.....(---((((...(((((.((((...(((((((....))).))))...))))))))).))))).((((((((......))))..)))). ( -32.20) >consensus _C__CA_A___AACAC_UACAUUCUAUC_CCUCGUCCAAGGUAUCGGCUCCAGCUUGUACCUGUGGAAGACGCACGUCAUCCUGGAGGCAGUGCGUCCGCGGGAGGACAAGUACG .................................((((.((((((.(((....))).))))))(((((...((((((((........))).))))))))))....))))....... (-27.88 = -27.72 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:50 2006