Locus 7631

Sequence ID X_DroMel_CAF1
Location 19,041,874 – 19,041,987
Length 113
Max. P 0.516788
window12525

overview

Window 5

Location 19,041,874 – 19,041,987
Length 113
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 83.95
Mean single sequence MFE -42.98
Consensus MFE -29.24
Energy contribution -29.30
Covariance contribution 0.06
Combinations/Pair 1.09
Mean z-score -1.50
Structure conservation index 0.68
SVM decision value -0.03
SVM RNA-class probability 0.516788
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19041874 113 - 22224390
UAAAACCUGGCCAAGGGGUAAGUGUUUGUUGCAAGGCGCUUGUGGUGUGGCACUCAGUGCGGUGCAAUAGCAGCGU-------CGGCAUUUUCCGGCGGCCGCAGAAGUGGCACCAAGCA
..((((((.(((....))).)).))))((((((..(((((.(((......)))..)))))..)))))).((..(((-------(((......))))))(((((....))))).....)). ( -42.50)
>DroSec_CAF1 10510 112 - 1
-AAAAACGGGCCAAGCGGUAAGUGUUUGUUGCAAUGAGCUUGUGGUGGGGCAAUCAGUGCGGUGCAAUAGCAGCGU-------CGGCAUUUUCCGGCGGCCGCGGAAGCGGCAACAAGCA
-....((..(((....)))..))((((((((((.(((((((......))))..))).)))(.(((....))).)((-------(((......))))).(((((....)))))))))))). ( -43.00)
>DroSim_CAF1 12182 112 - 1
-AAAAACGGGCCAAGCGGUAAGUGUUUGUUGCAAUGAGCUUGUGGUGGGGCAAUCAGUGCGGUGCAAUAGCAGCGU-------CGGCAUUUUCCGGCGGCCGCGGAAGCGGCAACAAGCA
-....((..(((....)))..))((((((((((.(((((((......))))..))).)))(.(((....))).)((-------(((......))))).(((((....)))))))))))). ( -43.00)
>DroYak_CAF1 10143 120 - 1
UAUCAGCUGGCCAAGCGGUAAGUGUUUGUUGCAAGGGGCGAGUGCAGGGGCAUACAGUGCGCUGCAGCUGCAGCAUCAGCGGGCGGCAUUUUCCGGCGGCCACAAAAGCGGCAAAAAGAA
..((.(((((..((((.((..((...(((((((.(..((.((((((..(.....)..))))))))..))))))))...))..)).)).))..))))).(((.(....).))).....)). ( -43.40)
>consensus
_AAAAACGGGCCAAGCGGUAAGUGUUUGUUGCAAGGAGCUUGUGGUGGGGCAAUCAGUGCGGUGCAAUAGCAGCGU_______CGGCAUUUUCCGGCGGCCGCAGAAGCGGCAACAAGCA
.........(((....((.(((((((((((((.....(((((((.((.......)).))))).))....)))))).........))))))).))))).(((((....)))))........ (-29.24 = -29.30 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:49 2006