Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,101,661 – 2,101,765 |
Length | 104 |
Max. P | 0.775741 |
Location | 2,101,661 – 2,101,765 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.14 |
Mean single sequence MFE | -30.50 |
Consensus MFE | -14.34 |
Energy contribution | -14.96 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.27 |
Mean z-score | -2.26 |
Structure conservation index | 0.47 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.775741 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2101661 104 - 22224390 GGUUUA----------ACCAGGGGAUGCUUAAUUGUGU--UCUCAACUUCAAAGGCAGAAAUGUUUACUCUUGACCAUGGGUUUAGGUAUAAUGUUAACUGGUUGGGAGAUU----GGUG ......----------((((((((((((......))))--))))........(((((....))))).((((..((((.(.(((.......))).)....))))..))))..)----))). ( -28.10) >DroSec_CAF1 2349 104 - 1 AGUUUA----------ACCAGACGAUGCUUAAUUGUGU--UCUCAACUUUAAAGGCAGAAAUGUUUACUCUUGACCAUGGGUUAAGGUGUACUGUUAACUGGUUGGGAGAUU----GGUG ......----------((((((((((.....))))).(--((((((((.....(((((.......(((((((((((...)))))))).))))))))....))))))))).))----))). ( -28.41) >DroEre_CAF1 2863 96 - 1 AGUGUA----------AUCAGGGUAUGCUUAAUUGUG----CCCAACUUCCAAGGCAGUAAUUUUUACUCCUAACCAUGGGUGUA------CUGUUAACUGGUUUGGAAAUU----GAUG ......----------((((((((((........)))----)))...(((((((.(((((((...(((.((((....)))).)))------..))).)))).)))))))..)----))). ( -30.20) >DroYak_CAF1 2205 117 - 1 AGUUUAAACAGGUUAAAUCAGGGUAUGCUUAGUUGCCUAGUUCCAACUUGCAAGGCAGAAAUGUUUACUCUCGACCAUGGGCUUG---ACCAUGUUAACUGGUUUGGAUAUUACUAGAGG .((((((((.((((((.((((((((.((....((((((.((........)).))))))....)).)))))).)).(((((.....---.))))))))))).))))))))........... ( -35.30) >consensus AGUUUA__________ACCAGGGGAUGCUUAAUUGUGU__UCCCAACUUCAAAGGCAGAAAUGUUUACUCUUGACCAUGGGUUUA___AUAAUGUUAACUGGUUGGGAGAUU____GAUG ................(((.(((.((((......))))...)))........(((((....))))).((((((((((.(...................))))))))))).......))). (-14.34 = -14.96 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:16 2006