Locus 7629

Sequence ID X_DroMel_CAF1
Location 19,039,032 – 19,039,138
Length 106
Max. P 0.826071
window12521

overview

Window 1

Location 19,039,032 – 19,039,138
Length 106
Sequences 4
Columns 106
Reading direction reverse
Mean pairwise identity 89.15
Mean single sequence MFE -37.72
Consensus MFE -29.54
Energy contribution -29.60
Covariance contribution 0.06
Combinations/Pair 1.24
Mean z-score -1.94
Structure conservation index 0.78
SVM decision value 0.70
SVM RNA-class probability 0.826071
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19039032 106 - 22224390
CGGUUGGUAUUCUUCCAGAGAAAGCGAAACGGACUCCACGGAUACCGGAACGGGAUUCCAGGCUCAAAACGGAAAAGGUUUUGGUGCCGGCCGCCAGCCGGAAAAU
((((((((.(((((...))))).((.....(((.(((.(((...))).....))).))).((((((((((.......))))))).))).)).))))))))...... ( -37.50)
>DroSec_CAF1 7411 106 - 1
CGGUUGGUAUACUUCAAGAGAAAGCGAAACUGACUCCAGGGAGACCGGAACGGGAUUCCAGGCUCAAAACGGAAAAGGUCGUGGUGCCGGCCGCCAACCGGAAAAU
((((((((.........(((...(.(((.(((..(((.((....))))).)))..))))...)))...........(((((......)))))))))))))...... ( -35.50)
>DroSim_CAF1 7244 106 - 1
CGGUUGGUAUACUUCCAGAGAAAGCGAAACUGACUCCAGGGAGACCGGAACGGGAUUCCAGGCUCAAAACGGAAAAGGUCGUGGUGCCGGCCGCCAGCCGGAAAAU
((((((((....((((.(((...(.(((.(((..(((.((....))))).)))..))))...))).....))))..(((((......)))))))))))))...... ( -36.60)
>DroYak_CAF1 7277 106 - 1
CGGUUGGUAUACUUCCAAAGACGGUGAAUCUGACACCGGCGAGAGCGGAACGGGAUUCGAGGCUCGAAACGGAAAAGGUCGUGGGUCCGACCGCCAGCCGGAAAAC
((((((((....((((.....(((((.......))))).((((..((((......))))...))))....))))..(((((......)))))))))))))...... ( -41.30)
>consensus
CGGUUGGUAUACUUCCAGAGAAAGCGAAACUGACUCCAGGGAGACCGGAACGGGAUUCCAGGCUCAAAACGGAAAAGGUCGUGGUGCCGGCCGCCAGCCGGAAAAU
((((((((....((((......(((....(((....)))((((.((......)).))))..)))......))))..(((((......)))))))))))))...... (-29.54 = -29.60 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:46 2006