| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,031,999 – 19,032,113 |
| Length | 114 |
| Max. P | 0.929829 |
| Location | 19,031,999 – 19,032,113 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 76.76 |
| Mean single sequence MFE | -19.32 |
| Consensus MFE | -15.60 |
| Energy contribution | -15.47 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.81 |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.929829 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19031999 114 - 22224390 CUCCCACAUCUCUAUUCCCACAU---CUCUUGACAGCAUUCAGUUGGUUCGCGUUCUUCGAGUACUUGAUCGCCAUUGCCAACAUGCUUUUCCACUUCACCAUCAUCUGGGACUUCC ...............(((((((.---....))..(((((...((((((..(((....((((....)))).)))....)))))))))))...................)))))..... ( -22.80) >DroPse_CAF1 81 102 - 1 ---CCAA-UCUCUACCCCCA----------U-GCAGCCUUCAGCUGGUUCGCGUUCUUUGAGUAUUUGAUCGCCAUUGCCAAUAUGCUGUACCACUUCACCAUCAUAUGGGACUUCC ---....-........((((----------(-(.(((.....)))(((..((((...(((.(((..((.....)).)))))).))))...)))............))))))...... ( -19.00) >DroGri_CAF1 81 97 - 1 CUU---------GAU-----------CUAUUUACAGCUUUUAGUUGGUUUGCAUUUUUUGAAUAUUUGAUUGCCAUUGCCAAUAUGCUGUUCCAUUUCACCAUUAUCUGGGACUUCC ..(---------((.-----------......(((((.....((((((..(((.((...........)).)))....))))))..)))))......)))(((.....)))....... ( -16.42) >DroEre_CAF1 81 107 - 1 CUC---------UACUC-UACUUUGUCCCUUGACAGCCUUCAGUUGGUUCGCGUUCUUCGAGUAUUUGAUCGCCAUCGCCAACAUGCUGUUCCACUUCACCAUCAUCUGGGACUUCC ...---------.....-......(((((..((((((.....((((((..(((.((...........)).)))....))))))..)))))).................))))).... ( -23.51) >DroYak_CAF1 81 104 - 1 CUA---------UACUC-UACUU---CCUUUGACAGCCUUCAGUUGGUUCGCGUUCUUCGAGUACUUGAUCGCCAUCGCCAACAUGCUGUUCCACUUCACCAUCAUCUGGGAUUUCC ...---------.....-.....---.....((((((.....((((((..(((....((((....)))).)))....))))))..)))))).....((.(((.....)))))..... ( -20.70) >DroAna_CAF1 81 105 - 1 CAC----AUUUUUAUUUCAACUU---UU-----CAGCCUUCAGUUGGUUCGCAUUCUUCGAGUACUUGAUCGCCAUCGCCAAUAUGCUGUUCCACUUCACCAUUAUCUGGGACUUCC ...----................---..-----.(((.....((((((..((.....((((....))))..))....))))))..)))((((((.............)))))).... ( -13.52) >consensus CUC_________UACUC_CACUU___CU_UUGACAGCCUUCAGUUGGUUCGCGUUCUUCGAGUACUUGAUCGCCAUCGCCAACAUGCUGUUCCACUUCACCAUCAUCUGGGACUUCC ................................(((((.....((((((..(((....((((....)))).)))....))))))..)))))......((.(((.....)))))..... (-15.60 = -15.47 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:45 2006