| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,024,584 – 19,024,704 |
| Length | 120 |
| Max. P | 0.991386 |
| Location | 19,024,584 – 19,024,704 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 70.00 |
| Mean single sequence MFE | -30.30 |
| Consensus MFE | -21.06 |
| Energy contribution | -21.07 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.70 |
| SVM decision value | 2.26 |
| SVM RNA-class probability | 0.991386 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19024584 120 - 22224390 GUGCACAUGUUUGAUCUCCUGAACAGGCACGGCUUCCCCCCACUUGGAUCCCUUCCAGGUGACAAUGAAGUAGACCGUGUCACCAAGCAUAUAGCUGUACAUAACAUUCUCAAUUGCUUU (((((((((((((.((....))...(((((((((((....((((((((.....)))))))).....))))....)))))))..)))))))...).))))).................... ( -34.80) >DroSim_CAF1 11067 100 - 1 GUGCACAUGUUUGAUCUGCUCAACAGGCACGGCUUCC-CCUACUGGGAUCCCUUCCAGGUGACGAUGAAGUAAACCGUGUCACCAAACAUGUAGCUGUACA------------------- (((((((((((((...((.....))(((((((..(((-(.....))))...((((..(....)...))))....)))))))..)))))))))....)))).------------------- ( -33.30) >DroEre_CAF1 10120 120 - 1 GUACACAUGUUUGAUUUCCUCAGAAGACACGGCACCCACCAAAUAGGACCUCUUCCAGGUGACGAAGAACAUGACCCAGUCUUUAGACUUGUAGCUGUGCAGCACCUUCUCAAUUUCUCU ((((((((((((....((((..(((((...((...((........)).)))))))..)).))....)))))))....((((....))))......))))).................... ( -22.80) >consensus GUGCACAUGUUUGAUCUCCUCAACAGGCACGGCUUCC_CCAACUAGGAUCCCUUCCAGGUGACGAUGAAGUAGACCGUGUCACCAAACAUGUAGCUGUACA__AC_UUCUCAAUU_CU_U (((((((((((((............(((((((.............(((.....))).(....)...........)))))))..))))))))....))))).................... (-21.06 = -21.07 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:41 2006