Locus 7624

Sequence ID X_DroMel_CAF1
Location 19,014,057 – 19,014,177
Length 120
Max. P 0.598685
window12515

overview

Window 5

Location 19,014,057 – 19,014,177
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 85.83
Mean single sequence MFE -34.27
Consensus MFE -25.02
Energy contribution -25.70
Covariance contribution 0.68
Combinations/Pair 1.21
Mean z-score -1.99
Structure conservation index 0.73
SVM decision value 0.13
SVM RNA-class probability 0.598685
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19014057 120 - 22224390
GCGUCGCUUCUAUUCAUUUAGUUGCACAAGUGAUGCACCAUCGAGAGCUUAUCGAUAACAGUCGACAGUGUUGGGCGUUUUGGUUUGAAACAGGUGAAAAACGUGUAUCAAGUUAAAACA
((((((((((((......)))......))))))))).(((......(((..(((((....))))).)))..)))..(((((..(((((.(((.((.....)).))).)))))..))))). ( -34.50)
>DroSim_CAF1 446 120 - 1
GCGUCGCUUAUAUUCAUUUAGUUGCACAAGUGAUGCACCAUAGAGAGUUUAUCGAUAACCGUCGACAGUGUUGGGCGUUUUGGCUAGAAACAGGUGAAAAACGUGUAUCUAGUGAAAACA
(((((((((.....((......))...))))))))).(((........((.(((((....))))).))...)))..(((((.((((((.(((.((.....)).))).)))))).))))). ( -34.60)
>DroYak_CAF1 455 118 - 1
GCGUCGCCUCUAUUCAUUUAGUUGCACAAGUGCAGCACCAUCGAUACUUUAUCGAUAAAUGUCGUCAGUGGUAAGCGUUUUGGUUAGGAACAGGUGAAAAGAAUGUAUCUAGCUAAAA--
((...(((.((...((((((((((((....))))))....((((((...)))))))))))).....)).)))..)).(((((((((((.(((..(.....)..))).)))))))))))-- ( -33.70)
>consensus
GCGUCGCUUCUAUUCAUUUAGUUGCACAAGUGAUGCACCAUCGAGAGUUUAUCGAUAACAGUCGACAGUGUUGGGCGUUUUGGUUAGAAACAGGUGAAAAACGUGUAUCUAGUUAAAACA
(((((((((.....((......))...)))))))))..........((((((((((....)))))......)))))((((((((((((.(((.((.....)).))).)))))))))))). (-25.02 = -25.70 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:40 2006