| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,012,921 – 19,013,025 |
| Length | 104 |
| Max. P | 0.973972 |
| Location | 19,012,921 – 19,013,025 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 76.72 |
| Mean single sequence MFE | -35.89 |
| Consensus MFE | -21.42 |
| Energy contribution | -21.00 |
| Covariance contribution | -0.42 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.60 |
| SVM decision value | 1.72 |
| SVM RNA-class probability | 0.973972 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19012921 104 + 22224390 AA----------CCCUGCCACUUACUGCCUGCGCUUCUCCAGGGCGAGUUCCUUUAGCUCGUUGGCCUUGCUGAAUCCGUUCUUGAUGGUGCGCGGCAGGUUCCACAGGGCCAA ..----------(((((.......(((((.(((((((..(((((((((((.....)))))....))))))..))).(((((...))))).)))))))))......))))).... ( -39.82) >DroVir_CAF1 1029 103 + 1 GCUAU-----------UUUACAUACUGUCUGCGCUUCUCCAACGCCAGCUGCUUCAGUUCGUUGGCUUUGGUGAAUGCAUUUUUAAUUGUCUUCGGCAGAUUCCAGAUGGCGAC (((((-----------((........(((((((((((.((((.((((((.((....))..)))))).)))).))).)).........((....))))))))...)))))))... ( -32.20) >DroPse_CAF1 1657 114 + 1 AAGAGCUUUUUUCUUUUCUACUUACUGUCUGCGCUUCUCCAGGGCCAGCUCCUUGAGCUCGUUGGCCUUGCUGAAGCCAUUCUUGAUGGUCUUCGGUAGAUUCCAGAUGGCCAC ..(.(((....(((..((((((.((((((((.(((((..((((((((((((...))))....))))))))..))))))).....))))))....))))))....))).)))).. ( -38.20) >DroEre_CAF1 1375 104 + 1 AG----------CCCUCCCACUUACUGCCUGCGCUUCUCCAAGGCCAGUUCCUUAAGCUCGUUGGCCUUGCUGAAUCCGUUCUUGAUGGUGCGCGGCAUGUUCCACAGGGCCAA .(----------((((.......((((((.(((((((..(((((((((.............)))))))))..))).(((((...))))).)))))))).)).....)))))... ( -38.92) >DroYak_CAF1 1533 101 + 1 -------------UAUUGAACUUACUGCCUGCGCUUCUCCAAGGCCAGUUCCUUGAGCUCGUUGGCCUUGCUGAAUCCGUUCUUGAUCGUGCGUGGCAGGUUCCACAGCGCCAA -------------....((((...(((((((((((((..((((((((((((...))))....))))))))..)))..((....))...))))).)))))))))........... ( -32.30) >DroPer_CAF1 1065 114 + 1 AAGAGCUUUUUUCUUUUCUACUUACUGUCUGCGCUUCUCCAGAGCCAGCUCCUUGAGCUCGUUGGCCUUGCUGAAGCCAUUCUUGAUGGUCUUCGGUAGAUUCCAGAUGGCCAG ..((((((...........((.....))(((.((((.....)))))))......))))))..(((((((((((((((((((...))))).))))))))).........))))). ( -33.90) >consensus AA__________CUCUUCUACUUACUGCCUGCGCUUCUCCAAGGCCAGCUCCUUGAGCUCGUUGGCCUUGCUGAAUCCAUUCUUGAUGGUCCGCGGCAGAUUCCACAGGGCCAA ..........................((((((..(((..((((((((((((...)))))....)))))))..))).(((((...)))))......))))))............. (-21.42 = -21.00 + -0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:39 2006