| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,011,456 – 19,011,573 |
| Length | 117 |
| Max. P | 0.614149 |
| Location | 19,011,456 – 19,011,573 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.02 |
| Mean single sequence MFE | -40.87 |
| Consensus MFE | -24.86 |
| Energy contribution | -24.95 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.614149 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19011456 117 - 22224390 GCAGCGCGCCCUGGAGGCGGCGAUAGUCAAGUACCGGAAGACGGCCGGCGGA---GACCGUUGGCAGAAGAUCGCCAACAGUGUGCCGGAGAAGACCAAGGAGGAGUGCCUGGUGCGCUA ..((((((((....((((((((((..((......(....)...((((((((.---..)))))))).))..))))))...........((......))..........)))))))))))). ( -49.40) >DroVir_CAF1 261 117 - 1 GCAGCGUGCUCUAGAGGCGGCCAUCGUUAAAUAUAGAAAAACCGCCGGCGGC---GAUCGUUGGCAAAAGAUUGCCAACAGUGUGCCCGAAAAGACCAAGGAAGAGUGCUUGGUUCGCUA ..((((.(((.....(((((...((..........))....))))))))(((---(((.((((((((....)))))))).)).))))......(((((((........))))))))))). ( -38.10) >DroGri_CAF1 261 120 - 1 ACAGCGCGCUUUGGAGGCGGCAAUUGUGAAGUAUCGAAAGACCGCCGGAGGUGCGGAUCGUUGGCAAAAGAUUGCCAACAGUGUGCCUGAAAAGACUAAGGAGGAGUGUCUGGUGCGCUA ....((((((((...(((((..(((....))).((....))))))).))))))))....((((((((....))))))))((((..((.((.....((....)).....)).))..)))). ( -46.60) >DroWil_CAF1 837 117 - 1 ACAGAGGGCUUUGGAAGCAGCCAUCGUGAAGUAUCGGAAAACAACUGGCGGU---GAUCGUUGGCAAAAAAUUGCCAAUAGUGUGCCGGAAAAAACUAAGGAUGAGUGUCUGGUACGCUA ...((.((((........))))(((((..(((...........))).)))))---..))((((((((....))))))))(((((((((((....(((.......))).))))))))))). ( -36.60) >DroMoj_CAF1 231 117 - 1 GCAGCGUGCCCUCGAGGCGGCCAUCGUUAAAUAUCGAAAAACCGCCGGCGGC---GAUCGCUGGGUGAAGAUUGCCAACAGUGUGCCAGAAAAGACCAAGGAGGAGUGCCUAGUGCGCUA ..((((..(......(((((...(((........)))....)))))((((((---(..(((((((..(...)..))..)))))))))........((.....))...)))..)..)))). ( -40.50) >DroAna_CAF1 264 117 - 1 GCAACGUGCGUUGGAAGCAGCAAUCGUCAAGUACCGAAAGACAGCUGGCGGG---GAUCGCUGGCAAAAAAUAGCUAAUAGUGUGCCGGAGAAAACCAAGGAAGAGUGCCUGGUGCGCUA ((.(((...((((....))))...))).......(....)...((..(((..---...)))..))........))...(((((..((((.(...(((......).)).)))))..))))) ( -34.00) >consensus GCAGCGUGCUCUGGAGGCGGCCAUCGUCAAGUAUCGAAAAACCGCCGGCGGC___GAUCGUUGGCAAAAGAUUGCCAACAGUGUGCCGGAAAAGACCAAGGAGGAGUGCCUGGUGCGCUA .......(((.....)))(((..(((........)))......((((((((......))))))))........)))...((((((((((....................)))))))))). (-24.86 = -24.95 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:37 2006