Locus 7620

Sequence ID X_DroMel_CAF1
Location 19,009,200 – 19,009,303
Length 103
Max. P 0.717761
window12511

overview

Window 1

Location 19,009,200 – 19,009,303
Length 103
Sequences 4
Columns 107
Reading direction reverse
Mean pairwise identity 86.87
Mean single sequence MFE -28.83
Consensus MFE -20.52
Energy contribution -20.52
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.81
Structure conservation index 0.71
SVM decision value 0.39
SVM RNA-class probability 0.717761
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19009200 103 - 22224390
AGCUCGGUUGCAUGUGCAUGUGCGUACGUUCGUAUCUAC----UUAUCUCUACCUAUUAUGUCCAAUGCCAAUGGCUGACUGCAGCUGCCAUUUGAGCACUUCAUUU
.((((((..(((..((((.(((.((((....)))).)))----.................(((....(((...))).)))))))..)))...))))))......... ( -23.90)
>DroSim_CAF1 26188 103 - 1
AGCUCGGUUGCAUGUGCAUGUGCGUACGUUCGUAUCUAC----GUAUCUCUGCCUAUUAUGUCCAAUGCCAAUGGCUGACUGCAGCUGCCAUUUGAGCACUUCAUUU
.(((((((.(((((.(((.(((((((.((....)).)))----))))...)))....))))).....)))((((((...........)))))).))))......... ( -26.60)
>DroEre_CAF1 30582 101 - 1
AGCUCGGUUGCAU------GUGCGUACGUACGUAUCUACAUACGUAUCUCCACAAAUUGUGGCCAAUGCCAAUGGCUGACUGCAGCUGCCAUUCGAGCACUUAAUUU
.(((((((..(((------(((.(...((((((((....))))))))..)))))...))..)))......((((((...........)))))).))))......... ( -32.90)
>DroYak_CAF1 32011 101 - 1
AGCUCGGUUGCAU------GUGCGUACGUUCGUAUCUACGUAUGUAUCUCUACCUAUUAUGGCCAAUGCCAAUGGCUGAUUGCAGCUGCCACUUGAGCACUUAAUAU
.(((((((.((..------((((((((((........))))))))))............((((....))))..(((((....))))))).)).)))))......... ( -31.90)
>consensus
AGCUCGGUUGCAU______GUGCGUACGUUCGUAUCUAC____GUAUCUCUACCUAUUAUGGCCAAUGCCAAUGGCUGACUGCAGCUGCCAUUUGAGCACUUAAUUU
.(((((((.((((......))))((((....))))................................)))...(((((....))))).......))))......... (-20.52 = -20.52 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:36 2006