| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,997,660 – 18,997,757 |
| Length | 97 |
| Max. P | 0.999206 |
| Location | 18,997,660 – 18,997,757 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 60.48 |
| Mean single sequence MFE | -31.23 |
| Consensus MFE | -15.65 |
| Energy contribution | -16.23 |
| Covariance contribution | 0.57 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.50 |
| SVM decision value | 3.43 |
| SVM RNA-class probability | 0.999206 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18997660 97 + 22224390 A-----------------AUUCAUGGGCCAGGGAAAUCCUAUGGAUCGCCGAUAAAUAAAGCUGAUACACGGAUUAUCAGU------CGAAGAUCAGUAGUUGCAGCUUUUUCGGGGAAA .-----------------.((((((((..........))))))))((.((((.....(((((((..((((.((((.((...------.)).)))).)).))..))))))).)))).)).. ( -29.10) >DroSec_CAF1 20078 110 + 1 AAUCGGCGGCCCAGUGAAAUUCAUGGGCCAGGGAAAUCCUAUGGAUCACCGAUAAAUAAAGCUGAUA--CGGCUUAUCAGU------CGAAGAUCAGUAGUUGCAGCUUU-UCGAGGA-A .(((((.((((((.((.....)))))))).(((....)))........)))))....(((((((..(--(.(((.(((...------....))).))).))..)))))))-.......-. ( -34.40) >DroAna_CAF1 22787 97 + 1 C-----------------UUUGGUGGGCUUGGUAAUCCCCAUGAAUCAGCGAUAAAUCACACUGAUA--GAGCCUAUUGGGGAAACUCAAAAGGCAAUAGAGACAGGUGUGUUGUG---- .-----------------.((.(((((..(....)..))))).))...((((((...(((.(((.((--..((((.(((((....))))).))))..))....)))))))))))).---- ( -30.20) >consensus A_________________AUUCAUGGGCCAGGGAAAUCCUAUGGAUCACCGAUAAAUAAAGCUGAUA__CGGCUUAUCAGU______CGAAGAUCAGUAGUUGCAGCUUU_UCGAGGA_A ...................((((((((..........))))))))((.((((.....(((((((.......((((.((..........)).))))........))))))).)))).)).. (-15.65 = -16.23 + 0.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:28 2006