| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,991,560 – 18,991,657 |
| Length | 97 |
| Max. P | 0.557043 |
| Location | 18,991,560 – 18,991,657 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 92.96 |
| Mean single sequence MFE | -27.20 |
| Consensus MFE | -22.36 |
| Energy contribution | -22.43 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.557043 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18991560 97 + 22224390 UUUCGGGCGCCUUGGUGAUAAACUUGCAUACUUUUGGGCAUUCGAUCGAGACCUUCUUGACCCCGUCAAUAAAACCUGUCCAAAUUGUGCAGCCCCC ....((((((....))........((((((..(((((((((((....)))......(((((...))))).......)))))))).)))))))))).. ( -27.40) >DroSec_CAF1 14056 96 + 1 UUCCGGGCGCCUUAGUGAUGGACUUGCAUACUUUUGGGCAUUCGAUCGAGACCUUCUUGACCCCGUCAAUAAAACCUGUCCAAAUUGUGCAGCC-CC ....((((.((........))...((((((..(((((((((((....)))......(((((...))))).......)))))))).)))))))))-). ( -28.10) >DroEre_CAF1 13759 96 + 1 UUUCGGGCGC-UCAGUGACCGACUUGCAUACUUUUGGGCAUUCGAUCGAGACCUUCUUGACCCCGUCAAUAAAACCUGUCCAAAUUGUGCAGCUCCC ....(((.((-..(((.....)))((((((..(((((((((((....)))......(((((...))))).......)))))))).)))))))).))) ( -25.10) >DroYak_CAF1 14180 97 + 1 UUUCGGGCGCCUCAGUGACCGACUUGCAUACUUUUGGGCAUUGGUUCGAGACCUUCGUGACCCCGUCAAUAAAACCUGUCCAAAUUGUGCAGCUCCC ..((((.(((....))).)))).(((((((..((((((((..((((((((...))))((((...))))....)))))))))))).)))))))..... ( -28.20) >consensus UUUCGGGCGCCUCAGUGACCGACUUGCAUACUUUUGGGCAUUCGAUCGAGACCUUCUUGACCCCGUCAAUAAAACCUGUCCAAAUUGUGCAGCCCCC ....((((.....(((.....)))((((((..((((((((.....(((((.....)))))....((.......)).)))))))).)))))))))).. (-22.36 = -22.43 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:27 2006