Locus 7613

Sequence ID X_DroMel_CAF1
Location 18,988,340 – 18,988,444
Length 104
Max. P 0.732514
window12496

overview

Window 6

Location 18,988,340 – 18,988,444
Length 104
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.80
Mean single sequence MFE -38.92
Consensus MFE -25.42
Energy contribution -25.98
Covariance contribution 0.56
Combinations/Pair 1.27
Mean z-score -1.43
Structure conservation index 0.65
SVM decision value 0.43
SVM RNA-class probability 0.732514
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18988340 104 - 22224390
CUUGGGCUACUCCAAGUCCAGUGCGGCGACCUUGACCCGUCUCUUUGGCUCUCUUAAGCAGCUGAACCGUUCGUCGUCGCUGCAGCGCAGGAUAUUCCC----GAGGA------------
((((((....(((..((....(((((((((..(((..((..((....(((......)))....))..)).)))..)))))))))))...)))....)))----)))..------------ ( -35.10)
>DroPse_CAF1 11690 103 - 1
GCUCAACUACUCGAAGUCGAGUGCUGCGACCUUGACCCGUCUCUUUGGCUCGCUCAAGCAGCUGAAUCGGUCCGGGUCGCUGCAAAGGAAGAUCUUCCA-----AAGA------------
........(((((....)))))((.(((((((.((((.(....((..(((.((....)))))..)).))))).))))))).))...((((....)))).-----....------------ ( -40.40)
>DroEre_CAF1 10774 104 - 1
CUUGGGCUACUCCAAGUCCAGUGCGGCGACCUUGACCCGUCUCUUCGGCUCCCUUAAGCAGCUGAAUCGGUCCUCGUCGUUGCAGCGCAGGAUAUUCCC----GAGGA------------
((((((....(((..((....(((((((((...((((.(....(((((((.(.....).))))))).)))))...)))))))))))...)))....)))----)))..------------ ( -36.80)
>DroYak_CAF1 11346 104 - 1
CUUGGGCUACUCCAAGUCUAGUGCGGCGACCUUGACCCGUCUCUUCGGCUCUCUUAAGCAACUGAAUCGGUCCUCGUCGCUGCAGCGCAAAAUAUUCCC----GAAAA------------
((((((....)))))).....(((((((((...((((.(..((....(((......)))....))..)))))...)))))))))...............----.....------------ ( -30.70)
>DroMoj_CAF1 23831 116 - 1
GCUCGGCUACUCCAAGUCCAGCGCAGCGACGCUGACGCGCCUCUUCGGCUCGCUGAAGCAGCUGAAUCGCUCCGGCUCGCUGCAGCGACGCCUCUUCCA----AAAGGAGGCGGUGGGCG
(((.((((......)))).)))(((((((.((((..(((....(((((((.((....))))))))).)))..))))))))))).((..((((.(((((.----...))))).)))).)). ( -57.10)
>DroAna_CAF1 10528 108 - 1
CUUAAACUACUCCAAGUCCAGUGCCGCGACCUUGACCCGCCUCUUUGGCUCUCUUAAGCAACUGAAUCGGACGGCGUCGCUGCAGCGCAGGAUCUUCCAGCGGGAGGU------------
.........((((........(((.(((((.(((..(((..((....(((......)))....))..))).))).))))).))).(((.((.....)).)))))))..------------ ( -33.40)
>consensus
CUUGGGCUACUCCAAGUCCAGUGCGGCGACCUUGACCCGUCUCUUCGGCUCUCUUAAGCAGCUGAAUCGGUCCGCGUCGCUGCAGCGCAGGAUAUUCCA____GAAGA____________
.(((((((......)))))))(((((((((...((.(((..((....(((......)))....))..)))))...))))))))).................................... (-25.42 = -25.98 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:22 2006