Locus 7612

Sequence ID X_DroMel_CAF1
Location 18,983,221 – 18,983,329
Length 108
Max. P 0.771895
window12495

overview

Window 5

Location 18,983,221 – 18,983,329
Length 108
Sequences 4
Columns 110
Reading direction reverse
Mean pairwise identity 83.56
Mean single sequence MFE -22.10
Consensus MFE -15.79
Energy contribution -16.60
Covariance contribution 0.81
Combinations/Pair 1.04
Mean z-score -1.83
Structure conservation index 0.71
SVM decision value 0.53
SVM RNA-class probability 0.771895
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18983221 108 - 22224390
AUACUCAAAAUGUAAUAUGAAUGAUA--UUGCUUUGAGUGUGCGAAAUGAGUGAACUGUUUUUGCAAUAUUAUUCACAUAUUCAUUGCAAUGAAUGUACAAUUUGCACAU
..(((((((..(((((((.....)))--)))))))))))(((((((.(((((((..(((....)))...))))))).((((((((....))))))))....))))))).. ( -30.10)
>DroSec_CAF1 5672 109 - 1
AUACCCAAAAUGUAAUAUGAAUGAUAAAAUGAUUUGAGUGUGCGAAAUGAGUGAACU-UGUUUGCCACAUUAUACAAAUAUUCAUUGCAAUGAAUGUUCAAUUUGCACAU
..........(((((..(((((.........(((((((((((..(((..((....))-..)))..))))))...)))))((((((....)))))))))))..)))))... ( -22.10)
>DroSim_CAF1 7638 109 - 1
AUACCCAAAAUGUAAUAUGAAUGAUAAAAAGAUUUGAGUGUGCGAAAUGAGUGAAGU-UGUUUGCCAUAUUAUACAAAUAUUCAUUGCAAUGAAUGUUCAAUUUGCACAU
.....................................((((((((((((.(..((..-..))..))))........(((((((((....)))))))))...))))))))) ( -18.70)
>DroYak_CAF1 6057 103 - 1
AUGUCCGAAAUAAAAAUUGAAUGAUAAA--GCUUUGAGUUUGCAAAAUGAGUGAA-----CUUGCAGUGUUAACCAAAUAAUCAUUUAAAUGAAUGUUCAAUUUGCACAU
.............(((((((((..(((.--(((.((((((..(.......)..))-----)))).))).))).........((((....))))..)))))))))...... ( -17.50)
>consensus
AUACCCAAAAUGUAAUAUGAAUGAUAAAAUGAUUUGAGUGUGCGAAAUGAGUGAACU_UGUUUGCAAUAUUAUACAAAUAUUCAUUGCAAUGAAUGUUCAAUUUGCACAU
.....................................(((((((((.((((..((.....))..)............((((((((....))))))))))).))))))))) (-15.79 = -16.60 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:21 2006