Locus 7611

Sequence ID X_DroMel_CAF1
Location 18,979,434 – 18,979,529
Length 95
Max. P 0.687057
window12494

overview

Window 4

Location 18,979,434 – 18,979,529
Length 95
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 92.32
Mean single sequence MFE -30.74
Consensus MFE -23.52
Energy contribution -24.48
Covariance contribution 0.96
Combinations/Pair 1.11
Mean z-score -1.76
Structure conservation index 0.77
SVM decision value 0.32
SVM RNA-class probability 0.687057
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18979434 95 + 22224390
AACCGGUUGGCACUGAAUUCCCCCGAAGGAAAGUCAUCGUUGGCACAAGAAGUUGUAGACACUUUCGGAUGGUGACUAAAUGCUGCCAAGCGGAC
..(((.((((((.....((((......))))((((((((((.(.....(((((.(....))))))).))))))))))......)))))).))).. ( -32.30)
>DroSec_CAF1 1932 95 + 1
AACCGGUUGGCACUGAAUUCCCCCGAAGGAAAGUCAUCGAUGGCACAAGAAGUGGUAGACACUUUCGGAUGCUGACUAAAGGCUGUCAAGCGGAC
..(((.((((((((...((((......))))(((((......((((..((((((.....))))))..).))))))))...)).)))))).))).. ( -29.70)
>DroSim_CAF1 3832 95 + 1
AACCGGUUGGCACUGAAUUCCCCCGAAGGAAAGUCAUCGAUGGCACAAGAAGUGGUAGACACUUUCGGAUGCUGACUAAAUGCUGUCAAGCGGAC
..(((.((((((.....((((......))))(((((......((((..((((((.....))))))..).))))))))......)))))).))).. ( -28.80)
>DroEre_CAF1 1753 95 + 1
AGCCAGUUGGCGCUGAAUUCCCCCGAAGGAAAGUCAUCGAUGGCACAAGUUGUUGAAGACAGUUUUGGAAGGUGACUAAAUGCUGUCGAGCGGAC
.(((....)))(((((.((((......))))..)).((((..((....))..)))).((((((.((...((....)).)).)))))).))).... ( -29.00)
>DroYak_CAF1 1908 95 + 1
AACCGGUUGGCGCUGAAUUCCCCCGAAGGAAAGUCAUCGAUGGCACAAGAAGUGGCAGACACUUUCGGAAGGUGACUAAAUGCUGCCAAGCGGAC
..(((.(((((((.........(((((((...(((.....((.(((.....))).))))).))))))).((....))....)).))))).))).. ( -33.90)
>consensus
AACCGGUUGGCACUGAAUUCCCCCGAAGGAAAGUCAUCGAUGGCACAAGAAGUGGUAGACACUUUCGGAUGGUGACUAAAUGCUGUCAAGCGGAC
..(((.((((((.....((((......))))((((((((....).(..((((((.....))))))..)..)))))))......)))))).))).. (-23.52 = -24.48 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:20 2006