| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,977,794 – 18,977,896 |
| Length | 102 |
| Max. P | 0.543010 |
| Location | 18,977,794 – 18,977,896 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 69.48 |
| Mean single sequence MFE | -21.96 |
| Consensus MFE | -7.97 |
| Energy contribution | -7.84 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.36 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.543010 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18977794 102 + 22224390 UAAACCAAAUUACUUGCUUCGUGAUUCAUAACAGCUUGCAGUGUUUCUGCUCACAUGCUAUUCAUGUAUUUAAGAUCACUGCUUCUAGCUUUUGAAUUUGGG ....(((((((((.......))))((((....((((.((((((..(((....(((((.....))))).....))).))))))....))))..))))))))). ( -25.90) >DroSec_CAF1 255 90 + 1 UAAACCAAAUUACUUGCUACGUGAUUCAUAUCAGCGUACAUUGUUUCUGCUUACAUGUUAUUCAUGUAUUUAAGAUCACUGCUCCUAGUA------------ ..........((((.((((((((((....)))).)))).......(((...((((((.....))))))....))).....))....))))------------ ( -15.10) >DroEre_CAF1 265 93 + 1 UAAACCA-AUUACUCUUUACGUGAUUCAUGGCAGCUCACAGA-UUUGUGCUUCCAAGUU-AUCAUGUAUUGAACAUCACAGCUCGUAACUUGUGAG------ .......-.....((..((((((((.(.(((.(((.((....-..)).))).))).)..-))))))))..))...((((((........)))))).------ ( -23.10) >DroYak_CAF1 249 91 + 1 UAAAUCAGAUUAAUCUUUACGUGAUUCAUGGCAGCUCACAGU-UUGCUGCUCACAAGUUCAGCUUGUGAU----GUUACAGCUCAUAACUUCUGAA------ ....(((((...........(((((.....(((((.......-..)))))(((((((.....))))))).----)))))...........))))).------ ( -23.75) >consensus UAAACCAAAUUACUCGCUACGUGAUUCAUAGCAGCUCACAGU_UUUCUGCUCACAAGUUAAUCAUGUAUUUAAGAUCACAGCUCCUAACUU_UGAA______ ....................(((((.......(((.............)))((((((.....))))))......)))))....................... ( -7.97 = -7.84 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:19 2006