Locus 7608

Sequence ID X_DroMel_CAF1
Location 18,968,553 – 18,968,662
Length 109
Max. P 0.999864
window12490

overview

Window 0

Location 18,968,553 – 18,968,662
Length 109
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 95.11
Mean single sequence MFE -38.28
Consensus MFE -35.31
Energy contribution -35.60
Covariance contribution 0.29
Combinations/Pair 1.03
Mean z-score -2.62
Structure conservation index 0.92
SVM decision value 4.30
SVM RNA-class probability 0.999864
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18968553 109 - 22224390
CCAA-GAGGGC---------CAAAAAGGGCCAGAAGGAUGUCAAUGCAAUCAGUGAGGCAUUUGACUUGGCCUUUCAUUAACUCGACUCAGCGCAGUCGAGUGCAAAGGACACAGUACA
((((-(..(((---------(......))))....(((((((...((.....))..)))))))..)))))(((((.....((((((((......))))))))..))))).......... ( -33.40)
>DroSec_CAF1 19904 118 - 1
CCAA-GAGGGCCAAAAGGGCCAAAAAGGGCCAGAAGGAUGUCAAUGCAAUCAGUGAGGCAUUUGACUUGGCCUUUCAUUAACUCGACUCAGCGCAGUCGAGUGCAAAGGACACAGUACA
((..-(((((((((...((((......))))........((((((((..........))).)))))))))))))).....((((((((......)))))))).....)).......... ( -39.60)
>DroSim_CAF1 4355 118 - 1
CCAA-GAGGGCCAAAAGGGCCAAAAAGGGCCAGAAGGAUGUCAAUGCAAUCAGUGAGGCAUUUGACUUGGCCUUUCAUUAACUCGACUCAGCGCAGUCGAGUGCAAAGGACACAGUACA
((..-(((((((((...((((......))))........((((((((..........))).)))))))))))))).....((((((((......)))))))).....)).......... ( -39.60)
>DroEre_CAF1 10431 118 - 1
CCAAA-AGGGCCAAAAGGGCCAAAAAGGGCCAGAAGGAUGUCAAUGCAAUCAGUGAGGCAUUUGACUUGGCCUUUCAUUAACUCGACUCAGCGCAGUCGAGUGCAAAGGACACAGGACG
((..(-((((((((...((((......))))........((((((((..........))).)))))))))))))).....((((((((......)))))))).....)).......... ( -39.20)
>DroYak_CAF1 11734 119 - 1
CCAAAGAGGGCCAAAAGGGCCAAAGAGGGCCAGAAGGAUGUCAAUGCAAUCAGUGAGGCAUUUGACUUGGCCUUUCAUUAACUCGACUCAGCGCAGUCGAGUGCAAAGGACACAGUACA
((...(((((((((...((((......))))........((((((((..........))).)))))))))))))).....((((((((......)))))))).....)).......... ( -39.60)
>consensus
CCAA_GAGGGCCAAAAGGGCCAAAAAGGGCCAGAAGGAUGUCAAUGCAAUCAGUGAGGCAUUUGACUUGGCCUUUCAUUAACUCGACUCAGCGCAGUCGAGUGCAAAGGACACAGUACA
((......((((.....))))...(((((((((..(((((((...((.....))..)))))))...))))))))).....((((((((......)))))))).....)).......... (-35.31 = -35.60 +   0.29)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:16 2006