Locus 7607

Sequence ID X_DroMel_CAF1
Location 18,968,277 – 18,968,393
Length 116
Max. P 0.606981
window12489

overview

Window 9

Location 18,968,277 – 18,968,393
Length 116
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.62
Mean single sequence MFE -30.32
Consensus MFE -23.48
Energy contribution -24.56
Covariance contribution 1.08
Combinations/Pair 1.07
Mean z-score -1.61
Structure conservation index 0.77
SVM decision value 0.15
SVM RNA-class probability 0.606981
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18968277 116 - 22224390
UAUGUUGGCAAUA--AGCAACGGCCCACCC--AAAUUAGGAGUUAUUUUGACCAGUCGGAAAAGGAAAAAGGGGGCGUUGCGCAAAGUGCUGAAGUCAGUGGAAAAUUUGUGGGCAAAAC
..((((.((((..--.((((((.(((((((--......)).))..((((((....))))))..........))).)))))).......((((....)))).......)))).)))).... ( -33.60)
>DroSec_CAF1 19621 116 - 1
UAAGUUGGCAAUA--AGCAACGGCCCACCC--AAAUUAGGAGUUAUUUUGACCAGCCGGAAAAGGAAAAAGGGGGCGUUGCGCAAAGUGCUGAAGUCAGUGGAAAAUUUGUGGGCAAAAC
...(((.((((..--.((((((.(((((((--......)).))............((......))......))).)))))).......((((....)))).......)))).)))..... ( -31.20)
>DroSim_CAF1 4079 116 - 1
UAAGUUGGCAAUA--AGCAACGGCCCACCC--AAAUUAGGAGUUAUUUUGACCAGCCGGAAAAGGAAAAAGGGGGCGUUGCGCAAAGUGCUGAAGUCAGUGGAAAAUUUGUGGGCAAAAC
...(((.((((..--.((((((.(((((((--......)).))............((......))......))).)))))).......((((....)))).......)))).)))..... ( -31.20)
>DroEre_CAF1 10183 109 - 1
UAAGUUGGCAAUA--AGCAACGGCCCACCCC-AAAUUAGGAGUUAUUUUGACCAGCCGGAAAAGGAAA--------GUUGCGCAAAGUGCUGAGGUCGGAGGAAAAUUUGUGGGCAAAAC
...((((......--..)))).((((((.((-......)).....((((((((..((......))...--------...((((...))))...))))))))........))))))..... ( -29.70)
>DroYak_CAF1 11442 120 - 1
UAAGUUGGCAAUAGAGGCAACGGCAGAGCCAAAAAUUAGGAGUUAUUUUGACCAGCCGGAAAAGGAAAAAGGGGGCGUUGCGCAAAGUGCUGAAGUCAGUGGAAAAUUUGUGGGCAAAAC
...(((.((((.....((((((.(((..((........))..)).......((..((......))......))).)))))).......((((....)))).......)))).)))..... ( -25.90)
>consensus
UAAGUUGGCAAUA__AGCAACGGCCCACCC__AAAUUAGGAGUUAUUUUGACCAGCCGGAAAAGGAAAAAGGGGGCGUUGCGCAAAGUGCUGAAGUCAGUGGAAAAUUUGUGGGCAAAAC
...(((.((((.....((((((.(((.........((((((....))))))....((......))......))).))))))......(((((....)))))......)))).)))..... (-23.48 = -24.56 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:15 2006