Locus 7606

Sequence ID X_DroMel_CAF1
Location 18,967,063 – 18,967,159
Length 96
Max. P 0.987764
window12488

overview

Window 8

Location 18,967,063 – 18,967,159
Length 96
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 90.25
Mean single sequence MFE -26.62
Consensus MFE -23.04
Energy contribution -25.20
Covariance contribution 2.16
Combinations/Pair 1.11
Mean z-score -2.02
Structure conservation index 0.87
SVM decision value 2.09
SVM RNA-class probability 0.987764
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18967063 96 + 22224390
AUUACUUGUUUGCGGUUUUUAUUAUAUCAUUCUCGUGUCAAACGGGCUCAGCAUUGUCACAUCCUUAGCCGCUGCUGACGAUGAUGAUGCUGCUGC-
...........((((................(((((.....)))))..((((((..(((..((.(((((....))))).)))))..))))))))))- ( -26.40)
>DroSec_CAF1 18371 96 + 1
AUUACUUGUUUGCGGUUUUUAUUAUAUCAUGCUCGUGUCAAACGGGCUCAGCAUUGUCACAUCCUUAGCCGCCGCUGACGAUGAUGAUGCUGCUGC-
...........((((...............((((((.....)))))).((((((..(((..((.(((((....))))).)))))..))))))))))- ( -30.60)
>DroSim_CAF1 2786 96 + 1
AUUACUUGUUUGCGGUUUUUAUUAUAUCAUGCUCGUGUCAAACGGGCUCAGCAUUGUCACAUCCUUAGCCGCUGCUGACGAUGAUGAUGCUGCUGC-
...........((((...............((((((.....)))))).((((((..(((..((.(((((....))))).)))))..))))))))))- ( -30.50)
>DroEre_CAF1 8953 96 + 1
AUUACUUGUUUGCGGUUUUUAUUAUAUCAUGGUCGUGUCAAACGGGCUCAGCAUUGUCACAUCCUUAGCCGCUGCUGACGAUGAUGAUGCUGCUGC-
....((((((((((..(.............)..))...))))))))..(((((..((((((((.(((((....))))).)))).))))..))))).- ( -26.42)
>DroAna_CAF1 8011 87 + 1
AUUACUUGUUUGCGGUUUUUAUUAUAUCAUGCUCAUGUCAAAUGGGCUCAGCAUUGUCACAUUCUUGGCU-CCGCUUCC---------GCUUCCGCA
..........(((((...............((((((.....))))))..(((...((((......)))).-..)))...---------....))))) ( -19.20)
>consensus
AUUACUUGUUUGCGGUUUUUAUUAUAUCAUGCUCGUGUCAAACGGGCUCAGCAUUGUCACAUCCUUAGCCGCUGCUGACGAUGAUGAUGCUGCUGC_
...........((((...............((((((.....)))))).(((((((((((..((.(((((....))))).))))))))))))))))). (-23.04 = -25.20 +   2.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:14 2006