| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,961,883 – 18,961,974 |
| Length | 91 |
| Max. P | 0.582662 |
| Location | 18,961,883 – 18,961,974 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 76.33 |
| Mean single sequence MFE | -16.56 |
| Consensus MFE | -9.84 |
| Energy contribution | -9.84 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.582662 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18961883 91 + 22224390 AAAAAGUGAGUUCUAAAAGGGG-----GGGGGUUGGGUGAACGCAAAACCCGAAAACAGUUGAAGUUGAGAGAAUCUUUCAAUUAAUCAUGAGCGA .........((((.........-----(((..(((.(....).)))..))).........((((((((((((...)))))))))..))).)))).. ( -22.60) >DroPse_CAF1 15013 78 + 1 AAA----------UAAAAUGGA-GAAA-------CGCAAAACGCAAACCCCGAAAACAGUUGAAGUUGAGAGAAUCUUUCAAUUAAUCAUGAGCGA ...----------.........-....-------(((....((.......))........((((((((((((...)))))))))..)))...))). ( -10.20) >DroSec_CAF1 13258 89 + 1 AAAAAGGUUGUUCCG--AGGGG-----UUGGGGUGGGUGAGCGCAAAACCCGAAAACAGUUGAAGUUGAGAGAAUCUUUCAAUUAAUCAUGAGCGA .......((((((((--(.(..-----((.((((..((....))...)))).))..)..))).(((((((((...)))))))))......)))))) ( -21.90) >DroYak_CAF1 4862 88 + 1 AAAAGGGG------G--AGGGGGGAAAUGAGGGUGGGCAAACGCAAAACCCGAAAACAGUUGAAGUUGAGAGAAUCUUUCAAUUAAUCAUGAGCGA ........------.--......(..((((((((..((....))...))))............(((((((((...)))))))))..))))...).. ( -17.90) >DroPer_CAF1 13449 78 + 1 AAA----------UAAAAUGGA-GAAA-------CGCAAAACGCAAACCCCGAAAACAGUUGAAGUUGAGAGAAUCUUUCAAUUAAUCAUGAGCGA ...----------.........-....-------(((....((.......))........((((((((((((...)))))))))..)))...))). ( -10.20) >consensus AAAA_G_______UAAAAGGGG_GAAA___GG_UGGGAAAACGCAAAACCCGAAAACAGUUGAAGUUGAGAGAAUCUUUCAAUUAAUCAUGAGCGA .........................................(((......(((......))).(((((((((...)))))))))........))). ( -9.84 = -9.84 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:13 2006