Locus 7600

Sequence ID X_DroMel_CAF1
Location 18,950,849 – 18,950,952
Length 103
Max. P 0.953231
window12471

overview

Window 1

Location 18,950,849 – 18,950,952
Length 103
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 82.45
Mean single sequence MFE -25.45
Consensus MFE -16.02
Energy contribution -16.14
Covariance contribution 0.12
Combinations/Pair 1.10
Mean z-score -2.64
Structure conservation index 0.63
SVM decision value 1.43
SVM RNA-class probability 0.953231
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18950849 103 - 22224390
UUUUGGCAUCCGGACAAUU-CUCCGACUCGGAUGACAUUUUCCAUUAAGUGACCCUUUUGUGGGCUCAUUUAGCCAUUUCGUUUUCCCACACCCUCGUUCAC------UU
...((((....(((.((((-(((((...)))).)).))).)))..((((((((((......))).)))))))))))..........................------.. ( -25.40)
>DroSec_CAF1 19078 104 - 1
UUUGGGCAUCCGGACAAUUCCUCCGACUCGGAUGACAUUUUCCAUUAAGUGAACCUUUUGUGGGCUCAUUUAGCAACUUCGUUUUUCCACACCCUCGCUCAC------UU
..(((((....(((.(((((.((((...)))).)).))).))).((((((((.(((.....))).)))))))).......................))))).------.. ( -24.60)
>DroSim_CAF1 7589 104 - 1
UUUGGGCAUCCGGACAAUUCCUCCGACUCGGAUGACAUUUUCCAUUAAGUGACCCUUUUGUGGGCUCAUUUAGCCACUUCGUUUUCCCACACCCUCGCUCAC------UU
..(((((....(((.(((((.((((...)))).)).))).))).(((((((((((......))).)))))))).......................))))).------.. ( -26.70)
>DroEre_CAF1 19819 95 - 1
UU-UGGCAAGCUGACAAUU-GUCCGUUUCGAAUGGCAUUUUCCAUUAAGUGGCCCUUUUGUGGGCUCAUUUAGUAAUU-------ACCCCAGCCUCGCUCGC------UU
..-.(((((((.(((....-))).))))....(((........((((((((((((......)))).))))))))....-------...))))))........------.. ( -25.76)
>DroYak_CAF1 9472 102 - 1
UUUUGGCAUCCGGACAAUU-CUCCGACUCGGAUGACAUUUUCCAUUAAGUGGCCCUUUUGUGGGCUCAUUUAGUAAUU-------UUCCCACUCUCGUUUUCCCACACUU
...(((.....(((.((((-(((((...)))).)).))).)))((((((((((((......)))).))))))))....-------...)))................... ( -24.80)
>consensus
UUUUGGCAUCCGGACAAUU_CUCCGACUCGGAUGACAUUUUCCAUUAAGUGACCCUUUUGUGGGCUCAUUUAGCAAUUUCGUUUUCCCACACCCUCGCUCAC______UU
....(((...((((.......))))....(((........))).(((((((((((......))).)))))))).......................)))........... (-16.02 = -16.14 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:59 2006