Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,095,254 – 2,095,353 |
Length | 99 |
Max. P | 0.729762 |
Location | 2,095,254 – 2,095,353 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 78.72 |
Mean single sequence MFE | -43.47 |
Consensus MFE | -28.00 |
Energy contribution | -27.90 |
Covariance contribution | -0.10 |
Combinations/Pair | 1.52 |
Mean z-score | -1.54 |
Structure conservation index | 0.64 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.729762 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2095254 99 - 22224390 AAGUUGGGCGGCCAGCGGCAACUAUCAGUUGCUUGGAGAUCCUAUGGUCUUAUUACGUGCCGUAGGAGCUGCAGAGUACGCCGGAUCGCAGGGCCGCUU .....((((((((.((((((((.....)))))(((.((.(((((((((..........))))))))).)).)))............)))..)))))))) ( -41.30) >DroVir_CAF1 18415 99 - 1 GAGCUGGGCGGCCAGCGGCAAUUAUCGUCUGCUCGGUGAUCCCAUGGUGCUGCUGCGUGCCGUUGGCGCGGCCGAAUAUGCCGGCUCCCAGGGCAAACU (..((((((((((((((((((((((((......)))))))........((....)).)))))))))).))((((.......)))).)))))..)..... ( -43.10) >DroGri_CAF1 17084 99 - 1 GAGCUGGGCGGCCGGUGGCAACUACAGGCUGCUUGGUGAUCCCAUGGUGUUGCUUCGUGCCGUCGGUGCAGCUGAAUAUGCCGGCACCCGGGGCAAUCU ..((..(((((((.(((....).)).)))))))..))(.((((((((..(......)..)))).(((((.((.......))..))))).)))))..... ( -41.70) >DroEre_CAF1 18790 99 - 1 AAGCUGGGCGGCCAGCGGCAACUUUCAGUUGCUUGGAGAUCCCAUGGUCCUAUUACGGGCCGUGGGAGCUGCAGAGUACGCCGGAUCACAGGGCCGCUU .....((((((((.((((((((.....)))))(((.((.(((((((((((......))))))))))).)).)))....))).(.....)..)))))))) ( -49.50) >DroYak_CAF1 21517 99 - 1 GAGCUGGGCGGCCAGCGGCAACUAUCAGUUGCUUGGGGAUCCCAUGGUCCUAUUACGUGCUGUGGGAGCUGCUGAGUACGCCGGAUCGCAGGGCCGCUU .....((((((((.((((((((.....)))))((((.(.((((((((..(......)..))))))))(((....))).).))))..)))..)))))))) ( -42.30) >DroAna_CAF1 19643 99 - 1 GAGUUGGGCCUCCUCCGGCAACUAUCAGCUACUCGGGGAUCCGAUGGUCCUGCUACGGGCCGUCGGAGCAGCGGAAUAUGCCGGUUCUCAGGGGCGUCU .....(((((((((((((((....((.(((.(((((....))((((((((......)))))))).))).))).))...)))))).....))))).)))) ( -42.90) >consensus GAGCUGGGCGGCCAGCGGCAACUAUCAGCUGCUUGGAGAUCCCAUGGUCCUACUACGUGCCGUCGGAGCUGCAGAAUACGCCGGAUCCCAGGGCCGCCU .....((((.(((((((((........)))))).(.((.(((((((((((......))))))))))).)).)...................))).)))) (-28.00 = -27.90 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:10 2006