| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,944,296 – 18,944,394 |
| Length | 98 |
| Max. P | 0.980014 |
| Location | 18,944,296 – 18,944,394 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 81.69 |
| Mean single sequence MFE | -33.42 |
| Consensus MFE | -23.77 |
| Energy contribution | -24.90 |
| Covariance contribution | 1.13 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.71 |
| SVM decision value | 1.85 |
| SVM RNA-class probability | 0.980014 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18944296 98 + 22224390 CUAAAUUUAUGCAACAGGCUUUUGGCCCAUUUGUAAAAUAUGCGCUGUCAUAAACCAGCG----GGCGAGAGCUACAGCUUGGAGUUGUCCUGCGAGUCCUG- ..........((....((((((((.(((....(((.....)))((((........)))))----))))))))))...))..(((.(((.....))).)))..- ( -28.50) >DroPse_CAF1 220277 103 + 1 UUAAAUUUAUGCAACAGGCUUUUGGCCCAUUUGUAAAUUAUGCGCUGUCAUAAAGCAGCGCAGCGGGGCGAACUUCAGCCUCAAGUUGGGUGUACAGUCCUGA ..............((((((....(((((...........((((((((......))))))))..(((((........)))))....)))))....)).)))). ( -36.30) >DroMoj_CAF1 109067 93 + 1 UUAAAUUUAUGCAACAGGCUU-UGGCCCAUUUGUAAAUUAUGCGCUGUCAUAAAGCAGCGCAACGGG-CGA----CGGCCACCAGUUGGC----CAGCUCCGA .........(((((..(((..-..)))...))))).....((((((((......)))))))).((((-(..----.(((((.....))))----).)).))). ( -35.70) >DroPer_CAF1 220700 102 + 1 UUAAAUUUAUGCAACAGGCUUUUGGCCCAUUUGUAAAUUAUGCGCUGUCAUAAAGCAGCGCAGCGGGACGAACUUCAGCCUCAAGUUGGGUGUACAGUCCUG- .........(((((..(((.....)))...))))).....((((((((......)))))))).((((((..((((((((.....)))))).))...))))))- ( -33.20) >consensus UUAAAUUUAUGCAACAGGCUUUUGGCCCAUUUGUAAAUUAUGCGCUGUCAUAAAGCAGCGCAGCGGGGCGAACUUCAGCCUCAAGUUGGCUGUACAGUCCUG_ .........(((((..(((.....)))...))))).....((((((((......)))))))).((((((.....(((((.....))))).......)))))). (-23.77 = -24.90 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:55 2006