| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,921,096 – 18,921,199 |
| Length | 103 |
| Max. P | 0.986488 |
| Location | 18,921,096 – 18,921,199 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.97 |
| Mean single sequence MFE | -27.77 |
| Consensus MFE | -18.58 |
| Energy contribution | -18.59 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.67 |
| SVM decision value | 2.04 |
| SVM RNA-class probability | 0.986488 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18921096 103 - 22224390 GAAAUUACGUAUCCUUUG-----------------AGUGAAUACUGCGGCUAAUGACAUUCAAGUGAAUCGAUUUCUCUAAAGGAAUCGAAUUAUUACUGAGUGUUUUGAUAGCAAUUAU .......((((...(((.-----------------...)))...))))((((..(((((((((((((.(((((((((....))))))))).)))))..))))))))....))))...... ( -26.00) >DroSec_CAF1 154865 103 - 1 CAAAUUGCGUAUCCUUUG-----------------AGUGAAUACUGUGGCUAAUGACAUUCAAGUGAAUCGAUUUCUCUAAAGGAAUCGAAUUAUUACUGAGUGUUUUGACAGCAAUUAU ..((((((((((.(....-----------------...).))))(((.(.....(((((((((((((.(((((((((....))))))))).)))))..)))))))).).))))))))).. ( -27.30) >DroEre_CAF1 148359 119 - 1 CAAAUUACUCACUCUUGGCGGAAUCGUGGAGUGCCAGUGAACACUGUGGCUAAUGACACAUAAGUGAAUUGGUUUCUCUACAGGAAUCGAAUAAUAACGGAGUGUUGUAA-AACAAUUAU ....((((.((((((((.(((..((((((((.((((((..((..((((........))))...))..))))))..)))))).))..))).....))..))))))..))))-......... ( -30.00) >consensus CAAAUUACGUAUCCUUUG_________________AGUGAAUACUGUGGCUAAUGACAUUCAAGUGAAUCGAUUUCUCUAAAGGAAUCGAAUUAUUACUGAGUGUUUUGA_AGCAAUUAU ............................................(((.......(((((((((((((.(((((((((....))))))))).)))))..))))))))......)))..... (-18.58 = -18.59 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:51 2006