Locus 7594

Sequence ID X_DroMel_CAF1
Location 18,918,583 – 18,918,700
Length 117
Max. P 0.547674
window12463

overview

Window 3

Location 18,918,583 – 18,918,700
Length 117
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 93.43
Mean single sequence MFE -25.52
Consensus MFE -21.45
Energy contribution -21.23
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -1.64
Structure conservation index 0.84
SVM decision value 0.03
SVM RNA-class probability 0.547674
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18918583 117 + 22224390
UUCUAUGCAAAUUUUUAUGUGUUAAAUGCAUUUUGUUGGAUUUAACAUUCUCGCUGAUUUUUUGGUUUACAUUUUUGCAUAUAAAUGAGGGCAAACUUUGCUUCGCC---CGGGCUAGAG
.((((.((..((((.((((((((((((.((......)).)))))))......((..(....)..))..........))))).))))..((((............)))---)..)))))). ( -25.70)
>DroPse_CAF1 194255 119 + 1
UUCUAUGCAAAUUUUUAUGUGUUAAAUGCAUUUUGUUGGAUUUAACAUUCUCGCUGAUUUUUUGGUUUACAUUUUUGCAUAUAAAUGAAGGCAAACUUUGCUUUGGUUUUUGGGC-ACAC
...((((((((.......(((((((((.((......)).)))))))))....((..(....)..)).......)))))))).((((.((((((.....)))))).))))......-.... ( -25.70)
>DroSec_CAF1 152263 117 + 1
UUCUAUGCAAAUUUUUAUGUGUUAAAUGCAUUUUGUUGGAUUUAACAUUCUCGCUGAUUUUUUGGUUUACAUUUUUGCAUAUAAAUGAGGGCAAACUUUGCUUCGCC---CGCGCUAGAG
.(((((((..((((.((((((((((((.((......)).)))))))......((..(....)..))..........))))).))))..((((............)))---)))).)))). ( -26.70)
>DroEre_CAF1 145905 117 + 1
UUCUAUGCAAAUUUUUAUGUGUUAAAUGCAUUUUGUUGGAUUUAACAUUCUCGCUGAUUUUUUGGUUUACAUUUUUGCAUAUAAAUGAGGGCAAACUUUGCUUCGCC---CGGGCCAGAG
........(((((.....(((((((((.((......)).))))))))).......)))))((((((((.(((((........))))).((((............)))---))))))))). ( -25.70)
>DroAna_CAF1 83851 117 + 1
UUCUAUGCAAAUUUUUAUGUGUUAAAUGCAUUUUGUUGGAUUUAACAUUCUCGCUGAUUUUUUGGUUUACAUUUUUGCAUAUAAAUGAGGGCAAACUUUGCUUCGUU---CGAGCACUAU
...((((((((.......(((((((((.((......)).)))))))))....((..(....)..)).......))))))))..(((((((.((.....)))))))))---.......... ( -23.60)
>DroPer_CAF1 194271 119 + 1
UUCUAUGCAAAUUUUUAUGUGUUAAAUGCAUUUUGUUGGAUUUAACAUUCUCGCUGAUUUUUUGGUUUACAUUUUUGCAUAUAAAUGAAGGCAAACUUUGCUUUGGUUUUUGGGC-ACAC
...((((((((.......(((((((((.((......)).)))))))))....((..(....)..)).......)))))))).((((.((((((.....)))))).))))......-.... ( -25.70)
>consensus
UUCUAUGCAAAUUUUUAUGUGUUAAAUGCAUUUUGUUGGAUUUAACAUUCUCGCUGAUUUUUUGGUUUACAUUUUUGCAUAUAAAUGAGGGCAAACUUUGCUUCGCC___CGGGC_AGAG
...((((((((.......(((((((((.((......)).)))))))))....((..(....)..)).......)))))))).......(((((.....)))))................. (-21.45 = -21.23 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:50 2006