| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,914,721 – 18,914,832 |
| Length | 111 |
| Max. P | 0.859857 |
| Location | 18,914,721 – 18,914,832 |
|---|---|
| Length | 111 |
| Sequences | 4 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 78.03 |
| Mean single sequence MFE | -33.68 |
| Consensus MFE | -22.23 |
| Energy contribution | -22.35 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.859857 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18914721 111 - 22224390 CACACAGCAUCCGAUCUCCACCCGCGGCACUGAGCUCUAAGCUCUGCUGCUCCAAGCAGCAGCAAGUUACAAGCCCCACGCUGCGGGCUAAUUUAUGUCGCGGACUGUACU ...((((.....(.....)..((((((((..((((.....))))(((((((......))))))).......((((((.....).)))))......)))))))).))))... ( -39.20) >DroSec_CAF1 148133 107 - 1 C-CACAGCAUCCGAUCUCCACCUGCGGCUCUGAGCUCUAAGG--UA-GGCUCCAAGCAGCAGCACGUUACAAGCCCAACGCUGCGGGCUAAUUUAUGUCGCGGACUGUACC .-.((((..((((........((((.(((..(((((......--..-)))))..))).)))).((((....(((((........))))).....))))..))))))))... ( -34.10) >DroSim_CAF1 121576 109 - 1 C-CACAGCAUCCGAUCUCCACCCGCGGCUCUGGGCUCGAAGCUCUG-GGCUCCAAGCAACAGCACGUUACAAGCCCCACGCUGCGGGCUAAUUUAUGUCGCGGACUGUACC .-.((((.....(.....)..(((((((....((((((.(((...(-((((...(((........)))...)))))...))).)))))).......))))))).))))... ( -36.60) >DroYak_CAF1 143272 85 - 1 C-CAUCCCAUCCAAUCUCCACCCGCGGCUCAGAGCUCCCAGCUUC-------------------------CAGCUCCACGCUGCGGGCUAAUUUAUGUCGCGGACUGUACU .-...................(((((((....(((((.((((...-------------------------.........)))).))))).......)))))))........ ( -24.80) >consensus C_CACAGCAUCCGAUCUCCACCCGCGGCUCUGAGCUCUAAGCUCUG_GGCUCCAAGCAGCAGCACGUUACAAGCCCCACGCUGCGGGCUAAUUUAUGUCGCGGACUGUACC .....................(((((((...((((.....))))...........................(((((........))))).......)))))))........ (-22.23 = -22.35 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:49 2006