| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,912,051 – 18,912,156 |
| Length | 105 |
| Max. P | 0.856929 |
| Location | 18,912,051 – 18,912,156 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 72.67 |
| Mean single sequence MFE | -47.44 |
| Consensus MFE | -23.94 |
| Energy contribution | -26.18 |
| Covariance contribution | 2.24 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.856929 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18912051 105 - 22224390 CCGUGGCCAUGGCCAUGGCUGUGACCCUCCUCCUGGAUGACCUUGAUGAUCUUAACAUCCGAGCCGUGGCCGUGGCUGUG------------ACCAUAAUCAUGUCCGUGAGAGUGG--- .((..(((((((((((((((.....(.(((....))).).....((((.......))))..)))))))))))))))..))------------.((((..((((....))))..))))--- ( -48.50) >DroSec_CAF1 145390 117 - 1 CCGUGGCCAUGGCCGUGGCUGUGACCCUCCUCCUGGAUGACCUUGAUGAUCUUAACCUCCGAGCCGUGGCCGUGGCUGUGACCAUGGUCGUGACCAUAAUCAUGACCGUGAGAGUGG--- .((..(((((((((((((((.......(((....))).((.(.....).))..........)))))))))))))))..))..(((((((((((......))))))))))).......--- ( -51.20) >DroSim_CAF1 118046 116 - 1 CAGGGGCCGCGGCC-UAGCGGUAACCCUCGUCCUGGAUCACCCUGGGGAUCAUAACCUCUGAACCGUGGCCGUGGCUGUGAGCAUGGUCGUGACCACAAUCAUGACCGUGAGAGUGG--- ..(.((((((((((-..(((((........(((..(......)..))).(((.......)))))))))))))))))).)...(((((((((((......))))))))))).......--- ( -50.20) >DroYak_CAF1 140488 117 - 1 CCAUGACCAUGGCCAUGGCCAUGACCCUCCUCCUGGAAGACCUUGAUGAUCUUAACCUCGGAGCCGUGCCCAUGGUCGUGACUGUGACUGUGGCCAUGGUCGUGACCGUGAGAGUGA--- .((((((((((((((((((((((..((..((((.((((((.(.....).))))..))..))))..).)..)))))))((.......)).)))))))))))))))(((....).))..--- ( -47.70) >DroAna_CAF1 76271 111 - 1 CCGU------GGCCGUGGCUGUGGUCCUCCUCCUGGAUGACCUUGACAACCUUCACCUCGCCCCCGUGCCCGUGUCCGUGGCCGUGAUCGUGACCUC---CGUGACUGUGUCCAUGGCCG ....------(((((((.....((((.(((....))).))))..((((....((((.((((..(((.(((((....)).))))).)...))))....---.))))...))))))))))). ( -39.60) >consensus CCGUGGCCAUGGCCAUGGCUGUGACCCUCCUCCUGGAUGACCUUGAUGAUCUUAACCUCCGAGCCGUGGCCGUGGCUGUGACCAUGAUCGUGACCAUAAUCAUGACCGUGAGAGUGG___ .((((((((((((((((((........((.((..((....))..)).)).............)))))))))))))))))).............((((..((((....))))..))))... (-23.94 = -26.18 + 2.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:45 2006