| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,903,814 – 18,903,930 |
| Length | 116 |
| Max. P | 0.831327 |
| Location | 18,903,814 – 18,903,930 |
|---|---|
| Length | 116 |
| Sequences | 4 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 71.68 |
| Mean single sequence MFE | -21.36 |
| Consensus MFE | -9.46 |
| Energy contribution | -11.15 |
| Covariance contribution | 1.69 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.44 |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.831327 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18903814 116 + 22224390 UUUUUUGCAAUAACUUGCAAUACCUUAAACUGUUAAGUAAAGCUGUAUCAAUGUGGAAUGUUA-UCUCCACCGACUGGCAGCAAAAUUAAGAAAUAAACAAACUUAACUUAGUGUCG ....((((((....))))))........((((((((((...(((((......(((((......-..)))))......))))).......(....)......)))))))..))).... ( -24.00) >DroSec_CAF1 136956 98 + 1 UUU--UGC---AACUUGCAAUACCUUAAACUGUAAGGUAAAGCUGUAUCAAUGUGGAAUGUUA-UCUCCACCGACUGGCAGCAAAAUCAAGAAAUAAACAAACU------------- ..(--(((---.....))))(((((((.....)))))))..(((((......(((((......-..)))))......)))))......................------------- ( -23.90) >DroSim_CAF1 108116 98 + 1 UUU--UGC---AACUUGCAAUACCUUAAACUAUAAGGUAAAGCUGUAUCAAUGUGGAAUGUUA-UCUCCACCCACUGGCAGCAAAAUCAAGAAAUAAACAAACU------------- ..(--(((---.....))))(((((((.....)))))))..(((((......(((((......-..)))))......)))))......................------------- ( -23.90) >DroYak_CAF1 132424 96 + 1 UUU--CG----------CAAUACCUUACAGUGUAGCGUGAAGCAGCAUCAAUGGGAAAUGCUAAUCUCUACAAACUGACAAAAAAAUGAAG---------AAAUAAAAUAAGUGUCG ...--.(----------((...(((....((((.((.....)).))))....)))...)))...............((((.........(.---------...)........)))). ( -13.63) >consensus UUU__UGC___AACUUGCAAUACCUUAAACUGUAAGGUAAAGCUGUAUCAAUGUGGAAUGUUA_UCUCCACCGACUGGCAGCAAAAUCAAGAAAUAAACAAACU_____________ ....................(((((((.....)))))))..(((((......(((((.........)))))......)))))................................... ( -9.46 = -11.15 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:44 2006