Locus 7589

Sequence ID X_DroMel_CAF1
Location 18,900,582 – 18,900,701
Length 119
Max. P 0.629053
window12455

overview

Window 5

Location 18,900,582 – 18,900,701
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 84.24
Mean single sequence MFE -45.12
Consensus MFE -32.94
Energy contribution -35.32
Covariance contribution 2.38
Combinations/Pair 1.14
Mean z-score -1.60
Structure conservation index 0.73
SVM decision value 0.20
SVM RNA-class probability 0.629053
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18900582 119 + 22224390
ACCGCACUUCAAGGCGGUGAGAAGGGAACCCGAUGGCAGCCAGCGUCAAAUAUUAUUCACCGCCCCACAGCUGCUCUCCUUUACCGCCGCCCACUUUGGCAAUUG-GCCGCAGAUGGUGC
............(((((((((..((....))((.((((((..(((...............)))......)))))).)).)))))))))(((((((.((((.....-)))).)).))).)) ( -39.46)
>DroSec_CAF1 133773 120 + 1
CCCGUACUUCAAGGCGGUGAAGAAGGAACCCGAUGGCAGCCAGCAUCAAAUAUUCUUCACCGCCCCACAGCUGCUCUCCUUCACUGCCGCCCACUUUGGCAAUUGGGCCGCAGAUGGUGC
...(((((....((((((((((((((...))((((........)))).....))))))))))))...................((((.(((((..........))))).))))..))))) ( -43.20)
>DroEre_CAF1 129377 119 + 1
CUCGUACUUCAAGGCGGUCAGGCAGGAGGCCGAUGGCCACCAGCGGCAAUUGAUCUUUACCGCCGCACAGCUGCUCUCCUUCAGUGCCGCCCAGUACGGCAAUUG-GCACCAGAUGGUGC
.(((((((....((((((...(.((((((((...))))....(((((..............)))))..........)))).)...)))))).)))))))......-(((((....))))) ( -46.04)
>DroYak_CAF1 129396 119 + 1
GCCGCACUUCAAGGCGGUGCGGCAGGAGCCCGAUGGCAAUCAGCGGCAAUUGGUGUUCACUGCCGCACAGCUGCUCUCCUUCAGUGCCGCCCACUAUGGCAAUUG-GCCCCAGAUGGUGC
...(((((((..((((((((((((((((((((((.((........)).))))).)))).)))))))...((((........))))))))))......(((.....-)))...)).))))) ( -51.80)
>consensus
CCCGCACUUCAAGGCGGUGAGGAAGGAACCCGAUGGCAACCAGCGGCAAAUAUUCUUCACCGCCCCACAGCUGCUCUCCUUCACUGCCGCCCACUAUGGCAAUUG_GCCCCAGAUGGUGC
...(((((((..(((((((..(((((((......((((((..(((((..............)))))...)))))))))))))..)))))))......(((......)))...)).))))) (-32.94 = -35.32 +   2.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:43 2006