| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,886,823 – 18,886,914 |
| Length | 91 |
| Max. P | 0.896557 |
| Location | 18,886,823 – 18,886,914 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 55.59 |
| Mean single sequence MFE | -14.97 |
| Consensus MFE | -8.02 |
| Energy contribution | -7.80 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.896557 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18886823 91 + 22224390 UUUUACUUUGCUGGAUGAUGACUUUUAUCCAAAAUGCGAAGCAA--UACUUUUGAUUCC-----------UAAAUAGAUUUCUUAAUAGCAGCUCGUAUACCUU ...........(((((((......)))))))..((((((.((..--..(....)....(-----------((...((....))...)))..))))))))..... ( -14.20) >DroSec_CAF1 122865 73 + 1 UUUUGUUUUGCUGGAUGAUGACAUUUAUCCAAAACGAUAGGCAA--UAUUUUUGGUUCU-----------UAUAUACA------------------UGUACCUU ..((((((...(((((((......))))))))))))).......--.......(((.(.-----------........------------------.).))).. ( -10.80) >DroEre_CAF1 121546 99 + 1 UUUUAC-UAGUUGGAUGAUGGCACUCAUCCAAAAUAAAAAGCACAUUUGUUUUUAUACAUAACUGUGUGCUCCCCAUGUUUAUU----AUAUCUAAUAUACCUC (((((.-...((((((((......))))))))..)))))(((((((.(((......))).....)))))))......((.((((----(....))))).))... ( -19.90) >consensus UUUUACUUUGCUGGAUGAUGACAUUUAUCCAAAAUGAAAAGCAA__UACUUUUGAUUCA___________UAAAUACAUUU_UU______A_CU__UAUACCUU ...........(((((((......)))))))......................................................................... ( -8.02 = -7.80 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:42 2006