Locus 7587

Sequence ID X_DroMel_CAF1
Location 18,885,276 – 18,885,370
Length 94
Max. P 0.550157
window12453

overview

Window 3

Location 18,885,276 – 18,885,370
Length 94
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 72.93
Mean single sequence MFE -36.02
Consensus MFE -11.97
Energy contribution -13.00
Covariance contribution 1.03
Combinations/Pair 1.19
Mean z-score -2.03
Structure conservation index 0.33
SVM decision value 0.03
SVM RNA-class probability 0.550157
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18885276 94 + 22224390
AAGUUUUGGCCCACUGAAUGGGUU-CAAAAAGUGCCAUAAAACACC---CGCUAAACAGAA----GUUUGCGU---------GG-GGCGG---GGGC--G---GCGGCCAAAGUUGGCUU
...((((((((((.....)))).)-)))))...(((........((---((((((((....----))))).))---------))-)((..---..))--)---))(((((....))))). ( -32.60)
>DroPse_CAF1 166795 119 + 1
AAGUUUU-GCCCAGUGAAUGGGUUUUAAGAAGUGCCAUAAAACACUGCGAACGAAGCAGAAAGAGCUGUGCAUCCCAACCGAGGGGGCCAGUGCGGCAGGGAGGCGACAAAAGUUGGCUU
.......-(((((.....))))).........((((........((((.......))))...(.((((.((.((((......)))))))))).)))))..(((.((((....)))).))) ( -37.80)
>DroSec_CAF1 121293 98 + 1
AAGUUUUGGCCCACUGAAUGGGUU-CAAAAAGAGCCAUAAAACACC---CGCUAAGCAGAA----GUUUGCAU---------GGUGGCGG---GGGC--GGGGGCGGCCAAAGUUGGCUU
..(((((.((((.(((....((((-(.....))))).........(---(((((.((((..----..)))).)---------))))))))---))))--.)))))(((((....))))). ( -39.20)
>DroEre_CAF1 120121 91 + 1
AAGUUUUGGCCCACUGAAUGGGCU-CGCAAAGAGCCAUAAAACAGC---CGCUAAGCAGAA----CUUUCCGC---------GGG----------GC--GCGGACGGCCAAAGUUGGCUU
...((((((((..(((....((((-(.....)))))..........---((((..((.((.----...)).))---------..)----------))--))))..))))))))....... ( -31.00)
>DroYak_CAF1 118661 97 + 1
AAGUUGUGGCCCACUGAAUGGGUU-CAAAAAGAGCCAUAAAACACC---CGCUAAGUGGAA----CUUUCCGC---------GGGGGCG----UGGC--GGGGGCGGCCAAAGUUGGCUU
........((((.(((....((((-(.....)))))........((---((((..(((((.----...)))))---------...))))----.)))--))))))(((((....))))). ( -38.40)
>DroPer_CAF1 167512 119 + 1
AAGUUUU-GCCCAGUGAAUGGGUUUUAAGAAGUGCCAUAAAACACUGCGAACGAAGCAGAAAGAACUGUGCAUCCCAGCCGAGGGCGGCAGUGCGGCAGGGAGGCGACAAAAGUUGGCUU
.......-(((((.....)))))..........(((........((((.......))))....((((.(((.((((.((((...((....)).)))).)))).))).....))))))).. ( -37.10)
>consensus
AAGUUUUGGCCCACUGAAUGGGUU_CAAAAAGAGCCAUAAAACACC___CGCUAAGCAGAA____CUUUGCAU_________GGGGGCG____CGGC__GGGGGCGGCCAAAGUUGGCUU
...((((((((((.....)))))..)))))...((((..................(((((......)))))........................((......)).........)))).. (-11.97 = -13.00 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:41 2006