Locus 7584

Sequence ID	X_DroMel_CAF1
Location	18,875,091 – 18,875,192
Length	101
Max. P	0.965268

overview

Window 8

Location	18,875,091 – 18,875,192
Length	101
Sequences	6
Columns	113
Reading direction	forward
Mean pairwise identity	78.15
Mean single sequence MFE	-27.48
Consensus MFE	-18.10
Energy contribution	-18.38
Covariance contribution	0.28
Combinations/Pair	1.12
Mean z-score	-1.19
Structure conservation index	0.66
SVM decision value	0.01
SVM RNA-class probability	0.538199
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18875091 101 + 22224390
--UCCACCA----------UUUCAGCAAUUUUCCACUCCCUCUUUGUUCUUGCGUUUUAAUUAAAAAGUGUCGCUUAGUGCGACUGUCCAUUUGACUGAUGGGUGGGAAGGGG
--((((((.----------..(((((((.................((....))................(((((.....))))).......))).))))..))))))...... ( -23.80)
>DroSec_CAF1 111315 101 + 1
--UCCCCCA----------UUUCAGCAAUUUUCCACUCCCUCUUUGUUCUUGCGUUUUAAUUAAAAAGUGUCGCUUAGUGCGACUGUCCAUUUGACUGAUGGGUGGGGAGGAG
--..(((((----------(((((((((.................((....))................(((((.....))))).......))).))))..)))))))..... ( -23.80)
>DroEre_CAF1 111179 100 + 1
--UCCCCCG-----------CUCAGCAGUUUUCCACUCCCGCUUUGUUCUUGCGUUUUAAUUAAAAAGUGUCGCUUAGUGCGACUGUCCAUUUGACUGAUGGGCGGGGCUGUG
--..(((((-----------((((.(((((.........(((.........)))...............(((((.....))))).........))))).)))))))))..... ( -34.20)
>DroYak_CAF1 109008 111 + 1
--UCCCCCAACCAUUUCCAUUUCAGCAAUUUUCCACUCCCGCUUUGUUCUUGCGUUUUAAUUAAAAAGUGUCGCUUAGUGCGACUGUCCAUUUGACUGAUGGGUGGGGAUAUG
--..(((((.(((((..((..(..(((............(((.........)))...............(((((.....))))))))..)..))...))))).)))))..... ( -27.70)
>DroAna_CAF1 43753 104 + 1
UUUCUCCCCACCA-------UUCAGU--CUCAUCGCUCCCCCCCAGGUCUUACGUUUUAAUUAAAAAGUGUCGCUUAGUGCGACUGUCCAUUUGACUGAUGGGUGGGAAUGGG
......((((((.-------.(((((--(..........((....))......................(((((.....))))).........))))))..))))))...... ( -29.20)
>DroPer_CAF1 158576 87 + 1
--UUCCCCG----------UCCCAGC-------CA-------CCCGUUUUUACGUUUUAAUUAAAAAGUGUCGCUUAGUGCGACUGUCCAUUUGAGUGAUGGGCGGAUGGUGC
--....(((----------(((....-------..-------..(((....)))...............(((((.....))))).(((((((.....)))))))))))))... ( -26.20)
>consensus
__UCCCCCA__________UUUCAGCAAUUUUCCACUCCCGCUUUGUUCUUGCGUUUUAAUUAAAAAGUGUCGCUUAGUGCGACUGUCCAUUUGACUGAUGGGUGGGGAGGGG
....((((.............................................................(((((.....))))).(((((((.....)))))))))))..... (-18.10 = -18.38 +   0.28)

alignment

secondary structure

dotplot

Window 9

Location	18,875,091 – 18,875,192
Length	101
Sequences	6
Columns	113
Reading direction	reverse
Mean pairwise identity	78.15
Mean single sequence MFE	-30.16
Consensus MFE	-17.02
Energy contribution	-17.97
Covariance contribution	0.95
Combinations/Pair	1.21
Mean z-score	-2.56
Structure conservation index	0.56
SVM decision value	1.58
SVM RNA-class probability	0.965268
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18875091 101 - 22224390
CCCCUUCCCACCCAUCAGUCAAAUGGACAGUCGCACUAAGCGACACUUUUUAAUUAAAACGCAAGAACAAAGAGGGAGUGGAAAAUUGCUGAAA----------UGGUGGA--
.......(((((..((((.(((.......(((((.....)))))(((((((........(....).......)))))))......)))))))..----------.))))).-- ( -26.96)
>DroSec_CAF1 111315 101 - 1
CUCCUCCCCACCCAUCAGUCAAAUGGACAGUCGCACUAAGCGACACUUUUUAAUUAAAACGCAAGAACAAAGAGGGAGUGGAAAAUUGCUGAAA----------UGGGGGA--
.((((((((((((.((.(((.....))).(((((.....)))))...............(....)......)).)).))))...(((.....))----------)))))))-- ( -28.40)
>DroEre_CAF1 111179 100 - 1
CACAGCCCCGCCCAUCAGUCAAAUGGACAGUCGCACUAAGCGACACUUUUUAAUUAAAACGCAAGAACAAAGCGGGAGUGGAAAACUGCUGAG-----------CGGGGGA--
.....((((((.((.((((..........(((((.....)))))..((((((.((....(((.........))).)).)))))))))).)).)-----------)))))..-- ( -31.50)
>DroYak_CAF1 109008 111 - 1
CAUAUCCCCACCCAUCAGUCAAAUGGACAGUCGCACUAAGCGACACUUUUUAAUUAAAACGCAAGAACAAAGCGGGAGUGGAAAAUUGCUGAAAUGGAAAUGGUUGGGGGA--
....((((((.((((..(((.....))).(((((.....)))))................((((.......((....))......))))..........)))).)))))).-- ( -30.92)
>DroAna_CAF1 43753 104 - 1
CCCAUUCCCACCCAUCAGUCAAAUGGACAGUCGCACUAAGCGACACUUUUUAAUUAAAACGUAAGACCUGGGGGGGAGCGAUGAG--ACUGAA-------UGGUGGGGAGAAA
....((((((((..((((((.........(((((.....)))))...............(((....((....))...)))....)--))))).-------.)))))))).... ( -35.30)
>DroPer_CAF1 158576 87 - 1
GCACCAUCCGCCCAUCACUCAAAUGGACAGUCGCACUAAGCGACACUUUUUAAUUAAAACGUAAAAACGGG-------UG-------GCUGGGA----------CGGGGAA--
......((((((((((((((.........(((((.....)))))((.((((....)))).))......)))-------))-------).)))).----------))))...-- ( -27.90)
>consensus
CCCAUCCCCACCCAUCAGUCAAAUGGACAGUCGCACUAAGCGACACUUUUUAAUUAAAACGCAAGAACAAAGAGGGAGUGGAAAAUUGCUGAAA__________UGGGGGA__
.....((((((((....(((.....))).(((((.....))))).............................)))(((........)))..............))))).... (-17.02 = -17.97 +   0.95)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:37 2006