Locus 7583

Sequence ID X_DroMel_CAF1
Location 18,866,775 – 18,866,878
Length 103
Max. P 0.532180
window12447

overview

Window 7

Location 18,866,775 – 18,866,878
Length 103
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 81.97
Mean single sequence MFE -34.30
Consensus MFE -22.54
Energy contribution -23.74
Covariance contribution 1.20
Combinations/Pair 1.21
Mean z-score -1.64
Structure conservation index 0.66
SVM decision value -0.00
SVM RNA-class probability 0.532180
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18866775 103 - 22224390
CGGUCAUAAUA---------UGGUUCCAUCUCGCAACCAGCUCACGUCGGAGUGCGAAAC---CUUUGCCACCUGGCUAAUAUUGCGAGAAUUCUUCUCGGGCUAUGAUGACAAA
..(((((.(((---------(((((.(.....).)))))((((..(((((.((((((...---..))).)))))))).........((((.....))))))))))).)))))... ( -28.90)
>DroSec_CAF1 103361 103 - 1
CGGUCGCCAUA---------AAGGUCCAUCUCGCAUCCAGCUCACGUCGGAGUGCGAAGC---CUUCGCCACCUGGCUAAUAUUGCGAGAAUUCUUCUCGGGCUGGGAUGACAAA
.((..(((...---------..))))).....(((((((((((..(((((.((((((...---..))).)))))))).........((((.....))))))))).))))).)... ( -34.50)
>DroSim_CAF1 98335 103 - 1
CGGUCGCCAUA---------AAGGUCCAUCUCGCAUCCAGCUCACGUCGGAGUGCGAAGC---UUUCGCCACCUGGCUAAUAUUGCGAGAAUUCUUCUCGGGCUGUGAUGACAAA
.((..(((...---------..))))).....(((((((((((..(((((.((((((...---..))).)))))))).........((((.....)))))))))).)))).)... ( -34.50)
>DroEre_CAF1 103875 97 - 1
CGGUCACAAUGGGC----------UCCAUCUCGCACCAAACUC-----GCAGUGUGAAGC---CUUCGCCACCUGGCUAAUAUUGCGAGAAUUCUUCUUGGACUGCGGUGACAAA
(((((.((((((((----------........)).)))..(((-----(((((((..(((---(..........)))).))))))))))........)))))))).(....)... ( -33.30)
>DroYak_CAF1 101320 115 - 1
CGGUCACAAUGGGCCACCUCAUGGUGCAUCUCGCAUCCAGCUCACGUCGGAGUGCGGAGCCACCUUCGCCACCUGGCUAAUAAUGCGAGAAUUCUUCUCGGACUGCGAUGACAAA
..((((..(((.((((.....)))).))).((((((((.((....(((((.((((((((....))))).)))))))).......))((((.....))))))).)))))))))... ( -40.30)
>consensus
CGGUCACAAUA_________AAGGUCCAUCUCGCAUCCAGCUCACGUCGGAGUGCGAAGC___CUUCGCCACCUGGCUAAUAUUGCGAGAAUUCUUCUCGGGCUGCGAUGACAAA
................................(((((((((((..(((((.((((((((....))))).)))))))).........((((.....)))))))))).)))).)... (-22.54 = -23.74 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:36 2006