Locus 7580

Sequence ID X_DroMel_CAF1
Location 18,859,945 – 18,860,042
Length 97
Max. P 0.718964
window12442

overview

Window 2

Location 18,859,945 – 18,860,042
Length 97
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 67.18
Mean single sequence MFE -17.39
Consensus MFE -8.59
Energy contribution -9.32
Covariance contribution 0.72
Combinations/Pair 1.20
Mean z-score -1.53
Structure conservation index 0.49
SVM decision value 0.39
SVM RNA-class probability 0.718964
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18859945 97 - 22224390
--------AUCCUCUUUCGUU-----------UCCCCUUUUGCAUAUAUUCGUAUCCCCU-CC---CCCCUUACAACAUAUCCGCUAUGGAGCCGUAGUGCUGCUCCUGGCAAAUCGGAC
--------.(((.........-----------...................(((......-..---.....))).........((((.(((((.(.....).))))))))).....))). ( -16.92)
>DroPse_CAF1 136235 95 - 1
-----UCCAUUCCAAUCCCCU-----------CCCACCUC---------CCGAGUCCCCGCCCCACCCCCUUACAACAUGUCUGUAAGUGAGUCACUUUGCUGAUCCUGGAAUAUCGGGC
-----................-----------.......(---------((((.(((............((((((.......)))))).(..(((......)))..).)))...))))). ( -17.10)
>DroSec_CAF1 96596 95 - 1
--------AUCCUCUUCCGCU-----------CCCCCUUUUGCAU--AUUCGUAUCCCCU-CU---CCCCUUACAACAUAUCCGCUAUGGAGCCGUAGUGCUGCUCCUGGCAAAUCGGAC
--------.......(((((.-----------.........))..--.............-..---.................((((.(((((.(.....).))))))))).....))). ( -18.40)
>DroSim_CAF1 90497 95 - 1
--------AUCCUCUUCCGCU-----------CCCCCUUUUGCAU--AUUCGUAUCCCCU-CU---CCCCUUACAACAUAUCCGCUAUGGAGCCGUAGUGCUGCUCCUGGCAAAUCGGAC
--------.......(((((.-----------.........))..--.............-..---.................((((.(((((.(.....).))))))))).....))). ( -18.40)
>DroYak_CAF1 94534 90 - 1
--------AUCCGUAUCCCCU-----------UCCUCUGCCGCU--------CCUCCCCU-CU--CCCCCUUACAACAUAUCCGCUAUGGAGCCGUAGUGCUGCUCCUGGCAAAUCGGAC
--------.((((........-----------....((((.(((--------((......-..--.......................))))).))))((((......))))...)))). ( -19.28)
>DroAna_CAF1 14631 110 - 1
CCUACCCCAUUUAUACCCCCAAUACCUACCCACCCACCCCAAAAU--AAUCAAAGU-----GC---CAACUUACAACAUAUCGGCUAUGGAGCCGUAAUGCUGCUCCUGGAAUAUCGGAC
......((...(((.((............................--.........-----((---(...............)))...(((((.(.....).))))).)).)))..)).. ( -14.26)
>consensus
________AUCCUCAUCCCCU___________CCCCCUUCUGCAU__AUUCGUAUCCCCU_CC___CCCCUUACAACAUAUCCGCUAUGGAGCCGUAGUGCUGCUCCUGGCAAAUCGGAC
...................................................................................((((.(((((.(.....).)))))))))......... ( -8.59 =  -9.32 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:31 2006