Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,090,009 – 2,090,129 |
Length | 120 |
Max. P | 0.520329 |
Location | 2,090,009 – 2,090,129 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.92 |
Mean single sequence MFE | -47.20 |
Consensus MFE | -40.26 |
Energy contribution | -40.30 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.14 |
Mean z-score | -1.31 |
Structure conservation index | 0.85 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.520329 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2090009 120 - 22224390 GAACAAAGCAUGUAAACCAUGCAGAAAGAACUCCACACCGGUCAACGCGCUGUGCGAGGCCGUGGCCAGUGAUCGCCUGGCCAAAAGGCCCAGGGCCAGGCACAGGGACACGAGCGGUGC .......(((((.....))))).............(((((.((....(.((((((..(((((.(((.(....).))))))))....((((...))))..)))))).)....)).))))). ( -50.20) >DroVir_CAF1 11064 120 - 1 GAAGAGUGCAUGAAGGCCGUGCAAAAAGUACUCGACGCCCGUCAGCGAGCUGUGCGACGCGGUGGCCAGGGAUCGACGGGCGAGCAGGCCCAGUGCCAGGCACAGGGACACCAGCGGCGC .....((((.....((((((((.....)))).....(((((((.(((.....))))))).))))))).((..((...((((......)))).((((...))))...))..))....)))) ( -44.50) >DroSec_CAF1 13549 120 - 1 GAACAAAGCAUGUAAACCGUGCAGAAAGAACUCCACACCGGUCAACGCGCUGUGCGAGGCCGUGGCCAGGGAUCGCCUGGCCAGAAGGCCCAGGGCCAGGCACAGAGACACGAGCGGUGC .......(((((.....))))).............(((((.((....(.((((((..((((.((((((((.....))))))))(......)..))))..)))))).)....)).))))). ( -50.70) >DroEre_CAF1 13557 120 - 1 GAACAGAGCAUGUAAACCGUGCAGAAAGAACUCCACACCGGUCAUCGAGCUGUGCGAGGCCGUGGCCAGUGAUCGCCUGGCCAAAAGGCCCAGGGCCAGGCACAGGGACACGAGUGGUGC .......(((((.....)))))........(.((((...(((((.((.(((......)))))))))).(((.((.(((((((....((((...)))).))).)))))))))..)))).). ( -45.50) >DroYak_CAF1 16148 120 - 1 GAACAGAGCGUGUAAACCGUGCAGAAAGAACUCCACACCGGUCAACGAGCUGUGCGAGGCAGUGGCCAGUGAUCGCCUGGCCAGGAGGCCCAAGGCCAGGCACAGGGACACGAGCGGUGC ..((.(..(((((...((((((........((((((((((.....)).).)))).)))....(((((((.(....))))))))...((((...))))..)))).)).)))))..).)).. ( -45.10) >consensus GAACAGAGCAUGUAAACCGUGCAGAAAGAACUCCACACCGGUCAACGAGCUGUGCGAGGCCGUGGCCAGUGAUCGCCUGGCCAGAAGGCCCAGGGCCAGGCACAGGGACACGAGCGGUGC .......(((((.....))))).............(((((.((......((((((.......(((((((.......)))))))...(((.....)))..))))))......)).))))). (-40.26 = -40.30 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:07 2006