Locus 7579

Sequence ID X_DroMel_CAF1
Location 18,858,834 – 18,858,931
Length 97
Max. P 0.616303
window12441

overview

Window 1

Location 18,858,834 – 18,858,931
Length 97
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 85.66
Mean single sequence MFE -25.33
Consensus MFE -17.57
Energy contribution -17.48
Covariance contribution -0.08
Combinations/Pair 1.17
Mean z-score -3.05
Structure conservation index 0.69
SVM decision value 0.17
SVM RNA-class probability 0.616303
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18858834 97 - 22224390
CUUCCC---UUCGGUUGACUUCUCCUGA-ACCAACUG-AAUAUUGUCUGCGCUAAAAUUUGUUGCCACAAUUUGUG-CAACAAAUUUUGUGCUUCAGCGUUUG
......---((((((((..(((....))-).))))))-))..(((...((((.((((((((((((.((.....)))-)))))))))))))))..)))...... ( -29.60)
>DroPse_CAF1 135478 87 - 1
--GCCC---CU---GCCACUGCUGCUGACACCAACUGGAAUAUUGUCUGCUUUGAAAUUUGUUGC-ACAAAUUGUGGCAACAAAUUUUGUGUG-------UUG
--....---..---(((((....((.((((((....)).....)))).))...((((((((((((-((.....)).))))))))))))))).)-------).. ( -22.40)
>DroSec_CAF1 95513 97 - 1
CUUCCC---UUCGGUCGACUUUUCCAGA-ACCAACUG-AAUAUUGUCUGCGCUAAAAUUUGUUGCCACAAUUUGUG-CAACAAAUUUUGUGCUCCAGCGUUUG
......---...((..(((..(..(((.-.....)))-...)..))).((((.((((((((((((.((.....)))-))))))))))))))).))........ ( -24.80)
>DroSim_CAF1 89418 97 - 1
CUUCCC---UUCGGUCGACUUUUCCAGA-ACCAACUG-AAUAUUGUCUGCGCUAAAAUUUGUUGCCACAAUUUGUG-CAACAAAUUUUGUGCUCCAGCGUUUG
......---...((..(((..(..(((.-.....)))-...)..))).((((.((((((((((((.((.....)))-))))))))))))))).))........ ( -24.80)
>DroEre_CAF1 92277 97 - 1
CUUCCC---UUUGCUCGACUUUUCCUAA-ACCAACUG-AAUAUUGUCUGCGCUAAAAUUUGUUGCCACAAUUUGUG-CAACAAAUUUUGUGCUCCAGCUUUUG
......---...(((.(((..(((....-.......)-))....))).((((.((((((((((((.((.....)))-)))))))))))))))...)))..... ( -23.10)
>DroYak_CAF1 93425 100 - 1
CUUCCCCUUUUUGGUCGACUUUUCCUGA-ACCAACUG-AAUAUUGUCUGCGCUAAAAUUUGUUGCCACAAUUUGUG-CAACAAAUUUUGUGCUUCAGCUUCGG
..........(((((((........)).-)))))(((-((..(((...((((.((((((((((((.((.....)))-)))))))))))))))..))).))))) ( -27.30)
>consensus
CUUCCC___UUCGGUCGACUUUUCCUGA_ACCAACUG_AAUAUUGUCUGCGCUAAAAUUUGUUGCCACAAUUUGUG_CAACAAAUUUUGUGCUCCAGCGUUUG
................................................((((.(((((((((((.(((.....))).)))))))))))))))........... (-17.57 = -17.48 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:30 2006