Locus 7576

Sequence ID X_DroMel_CAF1
Location 18,848,971 – 18,849,070
Length 99
Max. P 0.879325
window12434

overview

Window 4

Location 18,848,971 – 18,849,070
Length 99
Sequences 4
Columns 101
Reading direction forward
Mean pairwise identity 93.67
Mean single sequence MFE -35.38
Consensus MFE -32.05
Energy contribution -32.80
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -1.82
Structure conservation index 0.91
SVM decision value 0.91
SVM RNA-class probability 0.879325
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18848971 99 + 22224390
ACAUGU--GUGGCAGCCGCAGGGUGCACGCUCCUCGCGUUCCUUCCGCUCUUCCUGCGCUUCUCGCAUUUCGGCGGCGGCCAUAAAAAAUCUGUUGCGAAA
.....(--(((((.(((((.((((((((((.....))))......(((.......)))......))))))..))))).))))))................. ( -33.00)
>DroSec_CAF1 85512 101 + 1
ACAUGUGUGUGGCAGCCCCAGGGUGCACGCUCCUCGCGUUCCUUCCGCUCUUUCUGCGCUUCUCGCAUUUCGGCGGCGGCCAUAAAAAAUCUGUUGCGAAA
(((.((.((((((.(((((..(((((((((.....))))......(((.......)))......)))))..)).))).))))))....)).)))....... ( -32.90)
>DroEre_CAF1 83050 99 + 1
ACAUGU--GUGGCAGCCGCAGGGUGCACGCUCCUCGCGUUCCUUCCGCUCUUCCUGCGCUUCUCGCAUUUCGGCGGCUGCCAUAAAAAACCGUUUGCGAAU
.....(--(((((((((((.((((((((((.....))))......(((.......)))......))))))..))))))))))))......((....))... ( -38.00)
>DroYak_CAF1 83353 99 + 1
ACAUGU--GUGGCAGCCGCAGGGUGCACGCUUUCCGCGUUCCUUCCGCUCUUUCUGCGCUUCUCGCAUUUCGGCGGCUGCCAUAAAAAAUCUGUUGCGAAA
.....(--(((((((((((.((((((((((.....))))......(((.......)))......))))))..))))))))))))................. ( -37.60)
>consensus
ACAUGU__GUGGCAGCCGCAGGGUGCACGCUCCUCGCGUUCCUUCCGCUCUUCCUGCGCUUCUCGCAUUUCGGCGGCGGCCAUAAAAAAUCUGUUGCGAAA
........(((((((((((.((((((((((.....))))......(((.......)))......))))))..))))))))))).................. (-32.05 = -32.80 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:25 2006