Locus 7575

Sequence ID X_DroMel_CAF1
Location 18,848,474 – 18,848,578
Length 104
Max. P 0.639375
window12433

overview

Window 3

Location 18,848,474 – 18,848,578
Length 104
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 81.48
Mean single sequence MFE -21.30
Consensus MFE -15.01
Energy contribution -14.78
Covariance contribution -0.22
Combinations/Pair 1.10
Mean z-score -1.51
Structure conservation index 0.70
SVM decision value 0.22
SVM RNA-class probability 0.639375
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18848474 104 + 22224390
UUUAAUCCGCUCACUCCA--------CUUUCACCAUUACUCGGUGUGUGAAUAAUACCAUUAUUCAUUGCAUUUUGUUAUAAAUCUGUCAAUUUGCACAAUUGUGCGUACAA
.......(((.((.....--------....((((.......)))).(((((((((...)))))))))((((..(((............)))..))))....)).)))..... ( -18.00)
>DroPse_CAF1 117526 97 + 1
UCGAAC-------CUCCC--------CCUACCCAUUCACGGGGUGUGUGAAUAAUAUCGUUAUUCAUUGCAUUUUGUUAUAAAUCUGUCAAUUUGCACAAUUGUGCGUGCGG
......-------....(--------(.(((......((((((((((((((((((...)))))))).)))))))))).................((((....))))))).)) ( -20.00)
>DroEre_CAF1 82574 104 + 1
UUAAAUCCGCUCACUCCA--------CUUGCCCCAUUACGCGGUGUGUGAAUAAUACCAUUAUUCAUUGCAUUUUGUUAUAAAUCUGUCAAUUUGCACAAUUGUGCGUACAA
.......(((.((...((--------((.((........)))))).(((((((((...)))))))))((((..(((............)))..))))....)).)))..... ( -17.70)
>DroYak_CAF1 82842 108 + 1
UUUAAUCCGCUCACUCCAC----UCACUUUCCCCAUUACGCGCUGUGUGAAUAAUACCAUUAUUCAUUGCAUUUUGUUAUAAAUCUGUCAAUUUGCACAAUUGUGCGUACAA
...................----.............(((((((..((((((((((...)))))))...(((..(((............)))..))))))...)))))))... ( -20.00)
>DroAna_CAF1 3844 112 + 1
UUGCAUCUUGCCACACCACAGCCGCCCUCUGCCCUUGGCUGGGUGUGUGAAUAAUACCGUUAUUCAUUGCAUUUUGUUAUAAAUCUGUCAAUUUGCACAAUUGUGCGUACGA
..(((...(((((((((.((((((...........))))))))))))((((((((...))))))))..)))...))).................((((....))))...... ( -32.10)
>DroPer_CAF1 123552 97 + 1
UCGAAC-------CUCCC--------CCUACCCAUUCACGGGGUGUGUGAAUAAUAUCGUUAUUCAUUGCAUUUUGUUAUAAAUCUGUCAAUUUGCACAAUUGUGCGUGCGG
......-------....(--------(.(((......((((((((((((((((((...)))))))).)))))))))).................((((....))))))).)) ( -20.00)
>consensus
UUGAAUCCGCUCACUCCA________CUUUCCCCAUUACGCGGUGUGUGAAUAAUACCAUUAUUCAUUGCAUUUUGUUAUAAAUCUGUCAAUUUGCACAAUUGUGCGUACAA
.....................................((..((((((((((((((...)))))))).))))))..)).................((((....))))...... (-15.01 = -14.78 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:24 2006