Locus 7573

Sequence ID X_DroMel_CAF1
Location 18,844,439 – 18,844,540
Length 101
Max. P 0.568169
window12430

overview

Window 0

Location 18,844,439 – 18,844,540
Length 101
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 85.78
Mean single sequence MFE -27.57
Consensus MFE -22.98
Energy contribution -23.23
Covariance contribution 0.25
Combinations/Pair 1.10
Mean z-score -1.44
Structure conservation index 0.83
SVM decision value 0.07
SVM RNA-class probability 0.568169
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18844439 101 - 22224390
CAUAC------------AUAUAUUUUCUUGAAGUGUUCGAAAGGCACGCAUGUAAAACAUUUGGCGCUGGCAUGCGUUUCGGUUCCACUUCCAGAUCCCAAUGUGUACAACUC
..(((------------((((....(((.((((((.((((((.(((.((.(((..........)))...)).))).))))))...)))))).))).....)))))))...... ( -28.80)
>DroSec_CAF1 81049 101 - 1
CGUAC------------AUAUAUUUUCUUGGAGUGUUCGAAAGGCACGCAUGUAAAACAUUUGGCGCUGGCAUGCGUUUCGGUUCCACUUCCAGAUCCCAAUGUGUACAACUU
.((((------------((((....(((.((((((.((((((.(((.((.(((..........)))...)).))).))))))...)))))).))).....))))))))..... ( -32.20)
>DroEre_CAF1 78522 107 - 1
GUUAAAU------AUUUUCAUAUUUUCUUGGAGUGUUCGAAAGGCACGCAUGUAAAACAUUUGGCGCUGGCAUGCGUUUCGGUUCCACUGCCAGAUCCCAAUGUGUAAAGCUC
.......------.(((.((((((.(((.((((((.((((((.(((.((.(((..........)))...)).))).))))))...)))).)))))....)))))).))).... ( -24.80)
>DroYak_CAF1 78660 113 - 1
AUUCGUAAUUCCAGUUUAUAUAUUUUCUUGGAGUGUUUGAAAGGCACGCAUGUAAAACAUUUGGCGCUGGCAUGCGUUUCGGUUCCACAUCCAGAUCCCAAUGUGUUCAACUC
............((((.(((((((.(((.((((((...(((.((.((((((((....(....)......)))))))).))..)))))).))))))....)))))))..)))). ( -24.50)
>consensus
CUUAC____________AUAUAUUUUCUUGGAGUGUUCGAAAGGCACGCAUGUAAAACAUUUGGCGCUGGCAUGCGUUUCGGUUCCACUUCCAGAUCCCAAUGUGUACAACUC
.................(((((((.(((.((((((.((((((.(((.((.(((..........)))...)).))).))))))...)))))).)))....)))))))....... (-22.98 = -23.23 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:21 2006