Locus 7571

Sequence ID X_DroMel_CAF1
Location 18,842,165 – 18,842,270
Length 105
Max. P 0.554409
window12427

overview

Window 7

Location 18,842,165 – 18,842,270
Length 105
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 94.36
Mean single sequence MFE -18.56
Consensus MFE -16.92
Energy contribution -16.52
Covariance contribution -0.40
Combinations/Pair 1.09
Mean z-score -1.11
Structure conservation index 0.91
SVM decision value 0.04
SVM RNA-class probability 0.554409
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18842165 105 - 22224390
CGAUCUGGGUAGUGAAAACAAUUCUUCCUCUUCAUGGAAGAAGGCAACCAACCAACCACUUGCCUAAUGCAAUUUUCGAAUGCAAAAGCCAUAAAAAUAUCUAUU
.(((.(((((((((.......(((((((.......)))))))((.......))...))).)))))).((((.........))))..............))).... ( -21.10)
>DroSec_CAF1 78826 102 - 1
CGAUCUGGGUAGUGAAAACAAUUCUUCCUCUUCAUGGA---AGGCAACCAACCAACCACUUGCCUAAUGCAAUUUUCGAAUGCAAAAGCCAUAAAAAUAUCUAUU
.....((((((((....))..............((((.---((((((............))))))..((((.........))))....)))).....)))))).. ( -16.50)
>DroSim_CAF1 59444 102 - 1
CGAUCUGGGUAGUGAAAACAAUUCUUCCUCUUCAUGGA---AGGCAACCAACCAACCACUUGCCUAAUGCAAUUUUCGAAUGCAAAAGCCAUAAAAAUAUCUAUU
.....((((((((....))..............((((.---((((((............))))))..((((.........))))....)))).....)))))).. ( -16.50)
>DroEre_CAF1 76405 97 - 1
CGAUCUGGGUAGUGAAAACAAUUCUUCCUCUUCGUGGA---AGGCAAC----CAACCACUUGCCUAAUGCAAUUUUCGAAUGCAA-UGCCAUAAAAAUAUCUAUU
.....((((((((....))..............((((.---((((((.----.......))))))..((((.........)))).-..)))).....)))))).. ( -17.90)
>DroYak_CAF1 76439 98 - 1
CGAUCUGGGUAGUGAAAACAAUUCUUCCUCUUCGUGGA---AGGCGAG----CAACCACUUGCCUAAUGCAAUUUUCGAAUGCAAAAGCCAUAAAAAUAUCUAUU
.....((((((((....))..............((((.---(((((((----......)))))))..((((.........))))....)))).....)))))).. ( -20.80)
>consensus
CGAUCUGGGUAGUGAAAACAAUUCUUCCUCUUCAUGGA___AGGCAACCAACCAACCACUUGCCUAAUGCAAUUUUCGAAUGCAAAAGCCAUAAAAAUAUCUAUU
.....((((((((....))..............((((....((((((............))))))..((((.........))))....)))).....)))))).. (-16.92 = -16.52 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:18 2006