Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,841,865 – 18,841,964 |
Length | 99 |
Max. P | 0.997790 |
Location | 18,841,865 – 18,841,964 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 74.96 |
Mean single sequence MFE | -20.20 |
Consensus MFE | -13.59 |
Energy contribution | -13.40 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.06 |
Mean z-score | -2.44 |
Structure conservation index | 0.67 |
SVM decision value | 2.93 |
SVM RNA-class probability | 0.997790 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18841865 99 - 22224390 UGCUCCACCAGCUCCACCAGC--------------UCCCUCUUCUCAUCCAUUUUUGCUAGCUGCAUUUGAAUGCCUCAGCUGCCUGCUGGCAAUUCGAUUUCAUGCUGCAAU (((..((..((((.....)))--------------)..................((((((((.(((.((((.....)))).)))..))))))))..........))..))).. ( -23.10) >DroPse_CAF1 108553 80 - 1 UACAUCCCCAGCAGCCCCA---------------------------AUCCACG------UUCUGUAUUUGAAUGCCUCAGCUGCCUGCUGGCAAUUCGAUUUCAUGCUGCAAU ..........(((((...(---------------------------(((..((------(((.......)))))..(((((.....)))))......))))....)))))... ( -19.10) >DroSec_CAF1 78531 107 - 1 UACUACUCCUGCUCCACCACCACAGCGUCCCC------CCCUUCUCAUCCAUUUUUGCUCUCUGCAUUUGAAUGCCUCAGCUGCCUGCUGGCAAUUCGAUUUCAUGCUGCAAU ......................((((((....------.................(((.....))).(((((((((..(((.....)))))).))))))....)))))).... ( -19.80) >DroSim_CAF1 59140 113 - 1 UACUACUCCUGCUCCACCACCACAGCGCCCCCCCUUCCCCCUUCUCAUCCAUUUUUGCUCUCUGCAUUUGAAUGCCUCAGCUGCCUGCUGGCAAUUCGAUUUCAUGCUGCAAU ......................(((((............................(((.....))).(((((((((..(((.....)))))).)))))).....))))).... ( -18.80) >consensus UACUACUCCAGCUCCACCACC_________________CCCUUCUCAUCCAUUUUUGCUCUCUGCAUUUGAAUGCCUCAGCUGCCUGCUGGCAAUUCGAUUUCAUGCUGCAAU ...............................................................(((((((((((((..(((.....)))))).))))))....))))...... (-13.59 = -13.40 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:17 2006