Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,837,082 – 18,837,184 |
Length | 102 |
Max. P | 0.566632 |
Location | 18,837,082 – 18,837,184 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 88.28 |
Mean single sequence MFE | -14.65 |
Consensus MFE | -9.61 |
Energy contribution | -9.79 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.11 |
Mean z-score | -1.94 |
Structure conservation index | 0.66 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.566632 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18837082 102 + 22224390 UUUAUUCCUAU--UUUUAUGUGCUUGGCAGGAAUAAAAAGUACAAAAAGUGCAAAAAAAAAAG-AAAGAAAAAAUACAACAAAACCUGGGAAUAACAGAAACGGU .((((((((((--((((((.(((...)))...)))))))((((.....))))...........-......................))))))))).......... ( -15.70) >DroSec_CAF1 73847 102 + 1 UUUAUUCCUAU--UUUUAUGUGCAUGGUAGGAAUAAAAAGUACAAAAAGUGCAAAAA-AAAAGAAAAAAGAAAAUACAACAAAACCUGGGAAUAACAGAAACGGU (((((((((((--(...........))))))))))))..((((.....)))).....-...........................(((.......)))....... ( -16.20) >DroSim_CAF1 54330 103 + 1 UUUAUUCCUAU--UUUUAUGUGCAUGGGAGGAAUAAAAAGUACAAAAAGUGCAAAAAAAAAAGAAAAAAGGAAACACAACAAAACCUGGGAAUAACAGAAACGGU .(((((((((.--((((((....))))))((........((((.....)))).................(....).........))))))))))).......... ( -16.20) >DroEre_CAF1 71452 99 + 1 UUUAUUCCUUUUUUUUUAUGUGCAUGGGAGGAAUAAAAAGUACCAAAAAGAGAGAAAA------AAAGAGAAAAUACAACAAAACCAGGGAAUAACAGAAACGGU ....(((((((((((((.......(((...............))).......))))))------)))).)))................................. ( -10.50) >consensus UUUAUUCCUAU__UUUUAUGUGCAUGGGAGGAAUAAAAAGUACAAAAAGUGCAAAAAAAAAAG_AAAAAGAAAAUACAACAAAACCUGGGAAUAACAGAAACGGU .(((((((((...((((((.............)))))).((((.....))))..................................))))))))).......... ( -9.61 = -9.79 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:15 2006