Locus 7567

Sequence ID	X_DroMel_CAF1
Location	18,836,829 – 18,836,922
Length	93
Max. P	0.892628

overview

Window 2

Location	18,836,829 – 18,836,922
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	97.85
Mean single sequence MFE	-15.36
Consensus MFE	-13.00
Energy contribution	-13.20
Covariance contribution	0.20
Combinations/Pair	1.00
Mean z-score	-1.92
Structure conservation index	0.85
SVM decision value	0.97
SVM RNA-class probability	0.892628
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18836829 93 + 22224390
GAUGAUCAUUAUCAUCAUUUGCAGAGGUUACACUCAACUUCUUAGGAGCUUAUUCGUUCUGUCUGCUUUCUUUUUACAUUUUUGUCAAUUUAC
((((((....))))))....(((((((((......)))).....(((((......))))).)))))........................... ( -16.40)
>DroSec_CAF1 73589 93 + 1
GAUGAUCAUUAUCAUCAUUUGCAGAGGUUACACUCAACUUAUUAGGAGCUUAUUCCUUCUGCCUGCUUUCUUUUUACAUUUUUGUCAAUUUAC
((((((....))))))....(((((((.((..(((..........)))..))...)))))))............................... ( -15.10)
>DroSim_CAF1 54072 93 + 1
GAUGAUCAUUAUCAUCAUUUGCAGAGGUUACACUCAACUUCUUAGGAGCUUAUUCCUUCUGCCUGCUUUCUUUUUACAUUUUUGUCAAUUUAC
((((((....))))))....(((((((((......)))))).((((((.......))))))..)))........................... ( -15.20)
>DroEre_CAF1 71185 93 + 1
GAUGAUCAUUAUCAUCAUUUGCAGAGGUUACACUCAACUUCUUAGGAGCUUAUUCCUUUCGCCUGCUUUCUUUUUACAUUUUUGUCAAUUUAC
((((((....))))))....(((((((((......))))))..(((((....)))))......)))........................... ( -14.90)
>DroYak_CAF1 70875 93 + 1
GAUGAUCAUUAUCAUCAUUUGCAGAGGUUACACUCAACUUCUUAGGAGCUUAUUCCUUCUGCCUGCUUUCUUUUUACAUUUUUGUCAAUUUAC
((((((....))))))....(((((((((......)))))).((((((.......))))))..)))........................... ( -15.20)
>consensus
GAUGAUCAUUAUCAUCAUUUGCAGAGGUUACACUCAACUUCUUAGGAGCUUAUUCCUUCUGCCUGCUUUCUUUUUACAUUUUUGUCAAUUUAC
((((((....))))))....(((((((((......)))))...(((((....))))).....))))........................... (-13.00 = -13.20 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:14 2006