Locus 7566

Sequence ID X_DroMel_CAF1
Location 18,836,151 – 18,836,253
Length 102
Max. P 0.529648
window12421

overview

Window 1

Location 18,836,151 – 18,836,253
Length 102
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 90.33
Mean single sequence MFE -30.12
Consensus MFE -24.12
Energy contribution -24.40
Covariance contribution 0.28
Combinations/Pair 1.11
Mean z-score -1.37
Structure conservation index 0.80
SVM decision value -0.01
SVM RNA-class probability 0.529648
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18836151 102 + 22224390
UUCCUUGCCUUGGCUGCAAGUUUGUUUAUCUGUGGGCAAACAGAAACCCCUGCCAAUAAAAGAACAUGACUCAUG-ACACAGAGUAGCUGAAGGAAAGGGUUG
.(((((.(((((((((((((....))).((((((((((............))))..........((((...))))-.)))))))))))).)))).)))))... ( -29.90)
>DroSec_CAF1 72948 102 + 1
UUCCUUGCCUUGGCUGCAAGUUUGUUUAUCUGUGGGCAAACAGAACCCGCUGGCAAUAAAAGAACAUGACUCAUG-GCACAGAGUAGCUGAGGGAAAGGGUUG
.(((((.(((..(((((..(((((((((....)))))))))........(((((..........((((...))))-)).))).)))))..)))..)))))... ( -32.30)
>DroSim_CAF1 53402 102 + 1
UUCCUUGCCUUGGCUGCAAGUUUGUUUAUCUGUGGGCAAACAGAACCCGCUGGCAAUAAAAGAACAUGACUCAUG-ACACAGAGUAGCUGAGGGAAAGGGUUG
.(((((.(((..(((((..((((.(((((.(((.(((...........))).)))))))).)))).....((...-.....)))))))..)))..)))))... ( -31.70)
>DroEre_CAF1 70670 101 + 1
UGCCUU-GCUGGGCUGCAAGUUUGUUUAUCUGUGGGCAAACAGAAACCCCUUCCAGCAGAAGAACAUGACUCAUG-ACACAGAGCAGCUCGCAGAAAGGGUUG
.(((((-((.(((((((..((((((((.((((((((..........)))......))))).))))).)))((...-.....))))))))))))....)))).. ( -29.70)
>DroYak_CAF1 70170 103 + 1
UGCCUUGGCUUGGCUGCAAGUUUGUUUAUCUGUGGGCAAACAGAAACCCCUUCCAACCAAAGAACAUGACUCAUGAACACAGAACAGCUGAGGGAAAGGGUUG
.(((.......))).....(((((((((....)))))))))...(((((.((((..........((((...))))....(((.....)))..)))).))))). ( -27.00)
>consensus
UUCCUUGCCUUGGCUGCAAGUUUGUUUAUCUGUGGGCAAACAGAAACCCCUGCCAAUAAAAGAACAUGACUCAUG_ACACAGAGUAGCUGAGGGAAAGGGUUG
..((((.((((((((((..(((((((((....))))))))).......................((((...))))........))))))))))..)))).... (-24.12 = -24.40 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:13 2006