| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,835,907 – 18,836,001 |
| Length | 94 |
| Max. P | 0.958773 |
| Location | 18,835,907 – 18,836,001 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 73.68 |
| Mean single sequence MFE | -26.64 |
| Consensus MFE | -8.78 |
| Energy contribution | -8.94 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.33 |
| SVM decision value | 1.49 |
| SVM RNA-class probability | 0.958773 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18835907 94 + 22224390 -UGGUUGAUUGUAGUGGAAACGU-GA--------GGAGGAGAAUGUAGGCGAGUUCCCCUU---UUACGUUGACUUACAAAAUAAUAGAUCCACGGAUAAAGUUACC -.......((((((.(..(((((-((--------(.(((.((((........)))).))))---)))))))..)))))))..((((..(((....)))...)))).. ( -22.10) >DroSec_CAF1 72679 102 + 1 UCGGUUGAUUGUAGUGGAAACGG-GGAGUGGAGGUGAGGAGAACGUAGGCGAGUUCCCCUU---UUACGUUGACUCACAAAAUAAUAGAACCACGGAUAAGGUGAC- ..((((.(((((..((....)).-.((((.((.((((((.((((........)))).))))---..)).)).)))).....)))))..))))..............- ( -26.10) >DroSim_CAF1 53147 101 + 1 UCGCUUGAUUGUAGUGGAAACGG-GGAGUGGAGGUGAGGAGAACGUAGGCAAGUUCCCCC----UUACGUUGACUCACAAAAUAAUAGAACCACGGAUAAGGUGAC- ((((((..((((.(((....)..-.((((.((.((((((.((((........))))..))----)))).)).)))).............)).))))...)))))).- ( -30.40) >DroEre_CAF1 70448 82 + 1 -UGGUUGAUUGUAGUGGAAACG----AG-GA-GGGAAGAAGAGUGUAGGCGACUUCCCCU----UUACGUUGACACACAAAAUAAUAGAAACA-------------- -.......((((.(((..((((----..-((-(((..((((.((....))..))))))))----)..))))..))))))).............-------------- ( -23.10) >DroYak_CAF1 69930 94 + 1 -UGGUUGAUUGUAGUGGAAACAGCGGAGAGG-GGGAGGGAGUAUGUAGGCGAGUUCUUCCCUAAAUACGUUGACUCACAAGAUAAUAGAACCAA-UA---------- -(((((.(((((..((((..(((((.....(-((((((((.(.((....))).))))))))).....)))))..)).))..)))))..))))).-..---------- ( -31.50) >consensus _UGGUUGAUUGUAGUGGAAACGG_GGAG_GG_GGGGAGGAGAAUGUAGGCGAGUUCCCCU____UUACGUUGACUCACAAAAUAAUAGAACCACGGAUAA_GU_AC_ ...((..((.(((.((....))..............(((.((((........)))).))).....)))))..))................................. ( -8.78 = -8.94 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:12 2006