Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,834,592 – 18,834,689 |
Length | 97 |
Max. P | 0.938531 |
Location | 18,834,592 – 18,834,689 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 78.50 |
Mean single sequence MFE | -25.06 |
Consensus MFE | -16.87 |
Energy contribution | -17.76 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.26 |
Mean z-score | -2.06 |
Structure conservation index | 0.67 |
SVM decision value | 1.27 |
SVM RNA-class probability | 0.938531 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18834592 97 + 22224390 CACGCACUCGGAAACUAAUUUCAAGUGCGAACUAGCUUGUUGAGCCAUCAGUUGAUGGUAAGGCUUUUAGGGAUAUGAAUUCCUUCUAAAUGGGUUU ..((((((.((((.....)))).))))))....((((..((..((((((....))))))((((..((((......))))..))))...))..)))). ( -27.70) >DroSec_CAF1 71420 73 + 1 CACGCACUCGGAAACUAAUAUCAAGUGCGAACUAGCUGGUUCGG------------------------AAGGAUAUGAAUUCCUUCCAAAUGGGUUU ..((((((..((........)).))))))....((((.(((.((------------------------(((((.......))))))).))).)))). ( -24.70) >DroSim_CAF1 51632 97 + 1 CACGCACUCGGAAACUAAUUUCAAGUGCGAACUAGCUUGUUGAGCCAUCAGUUGAUGGUAAGGCUUUUAGGGAUAUGAAUUCCUUCUAAAUGGGUUU ..((((((.((((.....)))).))))))....((((..((..((((((....))))))((((..((((......))))..))))...))..)))). ( -27.70) >DroEre_CAF1 69193 90 + 1 CACGCACUCGGAAACUAAUUUCAAGUGCGAACUAGCUUGUUGAACCAUUAGUUGAUGGCCCGACUUUUAGGGAUAUGAAUUCCUCAUAAG------- ..((((((.((((.....)))).))))))..((((...((((..(((((....)))))..))))..))))...(((((.....)))))..------- ( -23.70) >DroYak_CAF1 68375 90 + 1 CACGCACUCGAAAACUAAUUUCAAGUACGAACUAGCUUGUUGAGCCGUCAGUUGAUGGCAAGGCUUUUAGGGAUAUGAAUUCCUCCUAAA------- ..((.(((.((((.....)))).))).))....(((((.....((((((....)))))).)))))...((((((....))))))......------- ( -21.50) >consensus CACGCACUCGGAAACUAAUUUCAAGUGCGAACUAGCUUGUUGAGCCAUCAGUUGAUGGCAAGGCUUUUAGGGAUAUGAAUUCCUUCUAAAUGGGUUU ..((((((.((((.....)))).)))))).........(((..((((((....))))))..))).....((((.......))))............. (-16.87 = -17.76 + 0.89)
Location | 18,834,592 – 18,834,689 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 78.50 |
Mean single sequence MFE | -21.86 |
Consensus MFE | -13.07 |
Energy contribution | -13.60 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.10 |
Mean z-score | -1.76 |
Structure conservation index | 0.60 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.637105 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18834592 97 - 22224390 AAACCCAUUUAGAAGGAAUUCAUAUCCCUAAAAGCCUUACCAUCAACUGAUGGCUCAACAAGCUAGUUCGCACUUGAAAUUAGUUUCCGAGUGCGUG .......(((((..(((.......))))))))(((....(((((....)))))........)))....(((((((((((....))).)))))))).. ( -20.50) >DroSec_CAF1 71420 73 - 1 AAACCCAUUUGGAAGGAAUUCAUAUCCUU------------------------CCGAACCAGCUAGUUCGCACUUGAUAUUAGUUUCCGAGUGCGUG .......((((((((((.......)))))------------------------)))))..........((((((((...........)))))))).. ( -23.20) >DroSim_CAF1 51632 97 - 1 AAACCCAUUUAGAAGGAAUUCAUAUCCCUAAAAGCCUUACCAUCAACUGAUGGCUCAACAAGCUAGUUCGCACUUGAAAUUAGUUUCCGAGUGCGUG .......(((((..(((.......))))))))(((....(((((....)))))........)))....(((((((((((....))).)))))))).. ( -20.50) >DroEre_CAF1 69193 90 - 1 -------CUUAUGAGGAAUUCAUAUCCCUAAAAGUCGGGCCAUCAACUAAUGGUUCAACAAGCUAGUUCGCACUUGAAAUUAGUUUCCGAGUGCGUG -------..((((((...)))))).........((.(((((((......))))))).)).........(((((((((((....))).)))))))).. ( -21.40) >DroYak_CAF1 68375 90 - 1 -------UUUAGGAGGAAUUCAUAUCCCUAAAAGCCUUGCCAUCAACUGACGGCUCAACAAGCUAGUUCGUACUUGAAAUUAGUUUUCGAGUGCGUG -------((((((.((........))))))))(((...(((.((....)).))).......)))....(((((((((((.....))))))))))).. ( -23.70) >consensus AAACCCAUUUAGAAGGAAUUCAUAUCCCUAAAAGCCUUACCAUCAACUGAUGGCUCAACAAGCUAGUUCGCACUUGAAAUUAGUUUCCGAGUGCGUG ........((((..(((.......)))............(((((....))))).........))))..((((((((...........)))))))).. (-13.07 = -13.60 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:11 2006