Locus 7563

Sequence ID X_DroMel_CAF1
Location 18,834,269 – 18,834,374
Length 105
Max. P 0.714798
window12417

overview

Window 7

Location 18,834,269 – 18,834,374
Length 105
Sequences 4
Columns 105
Reading direction reverse
Mean pairwise identity 81.70
Mean single sequence MFE -30.46
Consensus MFE -21.52
Energy contribution -24.27
Covariance contribution 2.75
Combinations/Pair 1.13
Mean z-score -1.74
Structure conservation index 0.71
SVM decision value 0.38
SVM RNA-class probability 0.714798
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18834269 105 - 22224390
UGUGGGUGGGUGUGUUUGUGUGUGUGUGUGGGCCUCAGUGUUAAUCCAAUUAACUUGGCUUGCAUCAAACACAUUCCUUUCCACCUAUAGAACGAAGGCUGACGA
((((((((((...(..(((((.((.(((..((((.....((((((...))))))..))))..))))).)))))..)...))))))))))................ ( -37.00)
>DroPse_CAF1 95528 98 - 1
AGUCCGUGUC------CCCGUGUCC-UCCUCUCCUCAGUGUUAAUCCAAUUAACUUGGCCUGCAUCAAACACAUUCCUUUGCAACAGCAAAAGGAGGGAAAACGG
...((((...------(((((((..-........((((.((((((...))))))))))..........))))..((((((((....)).)))))))))...)))) ( -24.55)
>DroSec_CAF1 71103 99 - 1
CGUGGGUGUG------UGUGUGUGUGUGCGGGCCUCAGUGUUAAUCCAAUUAACUUGGCUUGCAUCAAACACAUUCCUUUCCACCUAUAGAACGAAGGCUGACGA
.(((((((.(------.((((((.((((((((((.....((((((...))))))..)))))))).)).))))))......))))))))................. ( -31.00)
>DroEre_CAF1 68876 99 - 1
UGUGGGUGUG------CGUAUGUGUGUGUGGGCCUCAGUGUUAAUCCAAUUAACUUGGCUUGCAUCAAACACAUUCCUUUCCACCUAUAGAACGAAGGCUGACGA
((((((((..------...(((((((((..((((.....((((((...))))))..))))..)))...)))))).......))))))))................ ( -29.30)
>consensus
UGUGGGUGUG______CGUGUGUGUGUGCGGGCCUCAGUGUUAAUCCAAUUAACUUGGCUUGCAUCAAACACAUUCCUUUCCACCUAUAGAACGAAGGCUGACGA
.(((((((((.......((((((..(((((((((.....((((((...))))))..)))))))))...)))))).....)))))))))................. (-21.52 = -24.27 +   2.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:09 2006